Variant report
| Variant | rs8016367 |
|---|---|
| Chromosome Location | chr14:72812050-72812051 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs1356843 | 0.82[YRI][hapmap] |
| rs17111009 | 0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2079505 | 0.82[YRI][hapmap] |
| rs2079506 | 0.82[YRI][hapmap] |
| rs2239234 | 0.83[YRI][hapmap] |
| rs2239241 | 0.83[YRI][hapmap] |
| rs2529470 | 0.83[YRI][hapmap] |
| rs2529471 | 0.83[YRI][hapmap] |
| rs2681727 | 0.83[YRI][hapmap] |
| rs2681730 | 0.83[YRI][hapmap] |
| rs2681731 | 0.82[YRI][hapmap] |
| rs2681734 | 0.83[YRI][hapmap] |
| rs2681735 | 0.83[YRI][hapmap] |
| rs2681736 | 0.84[YRI][hapmap] |
| rs2681767 | 0.82[YRI][hapmap] |
| rs2681768 | 0.82[YRI][hapmap] |
| rs2681769 | 0.83[YRI][hapmap] |
| rs2681771 | 0.83[YRI][hapmap] |
| rs7155750 | 0.92[YRI][hapmap];0.81[AFR][1000 genomes] |
| rs8003559 | 0.83[YRI][hapmap] |
| rs8015917 | 0.80[YRI][hapmap] |
| rs8019358 | 0.83[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530794 | chr14:72113818-73034008 | Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv948800 | chr14:72462557-73150701 | Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 11 gene(s) | inside rSNPs | diseases |
| 3 | esv2757573 | chr14:72802736-72819684 | Weak transcription ZNF genes & repeats Strong transcription Enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | esv2759995 | chr14:72802736-72819684 | Weak transcription Enhancers ZNF genes & repeats Strong transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:72810200-72814800 | Strong transcription | Cortex derived primary cultured neurospheres | brain |
| 2 | chr14:72810400-72812600 | Weak transcription | Ganglion Eminence derived primary cultured neurospheres | brain |
