Variant report

Variant	rs8017861
Chromosome Location	chr14:104320443-104320444
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:104319613..104324063-chr14:104346589..104349290,5	MCF-7	breast:
2	chr14:104290311..104292684-chr14:104319761..104322144,2	MCF-7	breast:
3	chr14:104320208..104324271-chr14:104346660..104350133,4	MCF-7	breast:
4	chr14:104320014..104324951-chr14:104331915..104336985,8	MCF-7	breast:
5	chr14:104319048..104323751-chr14:104384975..104388146,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000156411	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs7149978	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7150438	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3332028	chr14:103581471-104328811	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	162 gene(s)	inside rSNPs	diseases
2	nsv1045162	chr14:104140525-104594841	Flanking Active TSS Strong transcription Bivalent Enhancer Enhancers Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv542204	chr14:104140525-104594841	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	esv2758368	chr14:104147525-104412813	Active TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
5	esv2760013	chr14:104147525-104412813	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
6	nsv902313	chr14:104162263-104378087	Bivalent Enhancer Genic enhancers Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
7	nsv902318	chr14:104255083-104464809	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
8	nsv902319	chr14:104255083-104620077	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	64 gene(s)	inside rSNPs	diseases
9	esv1838047	chr14:104283104-104359121	Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
10	nsv902321	chr14:104283104-104378087	Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
11	esv1818596	chr14:104312697-104359121	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
12	esv1836134	chr14:104312697-104359121	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
13	esv1837236	chr14:104313426-104332759	Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
14	nsv566028	chr14:104314023-104332759	Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:104315200-104327600	Weak transcription	Ovary	ovary
2	chr14:104315400-104321200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr14:104315800-104321000	Weak transcription	Gastric	stomach
4	chr14:104315800-104321000	Weak transcription	Pancreas	Pancrea
5	chr14:104315800-104321000	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr14:104316000-104321400	Weak transcription	Colonic Mucosa	Colon
7	chr14:104316000-104321600	Weak transcription	Left Ventricle	heart
8	chr14:104316000-104321600	Weak transcription	Right Ventricle	heart
9	chr14:104316200-104321200	Weak transcription	Fetal Intestine Small	intestine
10	chr14:104316200-104321400	Weak transcription	Fetal Heart	heart
11	chr14:104316400-104321200	Weak transcription	Fetal Intestine Large	intestine
12	chr14:104316400-104321400	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr14:104316600-104321000	Weak transcription	Duodenum Mucosa	Duodenum
14	chr14:104319800-104323400	Enhancers	Placenta	Placenta
15	chr14:104320000-104322600	Flanking Active TSS	HepG2	liver
16	chr14:104320000-104325400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr14:104320200-104321600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr14:104320200-104321800	Enhancers	Fetal Kidney	kidney
19	chr14:104320200-104323200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr14:104320200-104323600	Enhancers	Placenta Amnion	Placenta Amnion
21	chr14:104320200-104325200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr14:104320400-104320600	Enhancers	H9 Cell Line	embryonic stem cell
23	chr14:104320400-104320600	Enhancers	Esophagus	oesophagus
24	chr14:104320400-104321200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr14:104320400-104321200	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr14:104320400-104321400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr14:104320400-104321600	Enhancers	Primary hematopoietic stem cells	blood
28	chr14:104320400-104322600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr14:104320400-104322800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr14:104320400-104323000	Enhancers	Fetal Lung	lung
31	chr14:104320400-104323000	Enhancers	Lung	lung
32	chr14:104320400-104323200	Enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr14:104320400-104323600	Enhancers	H1 Cell Line	embryonic stem cell
34	chr14:104320400-104323800	Enhancers	Spleen	Spleen

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links