Variant report

Variant	rs8018032
Chromosome Location	chr14:64833333-64833334
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 9 )

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10131195	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10145700	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10146204	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1076991	0.89[CEU][hapmap];0.91[TSI][hapmap]
rs11158538	0.89[CEU][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12100642	0.84[EUR][1000 genomes]
rs1256093	0.85[CEU][hapmap];0.87[GIH][hapmap];0.83[TSI][hapmap]
rs1256095	0.89[ASW][hapmap];0.89[CEU][hapmap];0.95[GIH][hapmap];0.89[TSI][hapmap];0.82[EUR][1000 genomes]
rs1256097	0.83[EUR][1000 genomes]
rs1256099	0.81[EUR][1000 genomes]
rs1256100	0.82[EUR][1000 genomes]
rs1256101	0.81[EUR][1000 genomes]
rs1256102	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1256107	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1256108	0.82[EUR][1000 genomes]
rs1256109	0.81[EUR][1000 genomes]
rs1256110	0.82[CEU][hapmap]
rs1256111	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1256112	0.83[GIH][hapmap]
rs1262246	0.82[EUR][1000 genomes]
rs1270057	0.81[EUR][1000 genomes]
rs28570137	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2978381	0.82[CEU][hapmap]
rs2983733	0.83[MEX][hapmap];0.89[TSI][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2983736	0.89[TSI][hapmap];0.84[EUR][1000 genomes]
rs2983738	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2983739	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2983741	0.88[EUR][1000 genomes]
rs2983742	0.90[EUR][1000 genomes]
rs2983746	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2983747	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2987958	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2987959	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2987960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2987961	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2987962	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2987963	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2987964	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2987965	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2987969	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2987970	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2987971	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2987972	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2987973	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2987974	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2987977	0.90[EUR][1000 genomes]
rs2987979	0.83[MEX][hapmap];0.89[TSI][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2987982	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2987984	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3020436	0.89[TSI][hapmap];0.84[EUR][1000 genomes]
rs3020438	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3020439	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3020441	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3020442	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3020449	0.82[CEU][hapmap]
rs35020344	0.85[CEU][hapmap];0.91[GIH][hapmap];0.85[TSI][hapmap]
rs4902274	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57087457	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57351847	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7151163	0.89[CEU][hapmap];0.89[EUR][1000 genomes]
rs8003153	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8007217	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8010584	0.88[EUR][1000 genomes]
rs9323449	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

mRNA abundance (count:9)

SNP	Gene	Cis/trans	Tissue	Source
rs8018032	MTHFD1	cis	Thyroid	GTEx
rs8018032	MTHFD1	Cis_1M	lymphoblastoid	RTeQTL
rs8018032	KCNH5	cis	parietal	SCAN
rs8018032	MTHFD1	cis	cerebellum	SCAN
rs8018032	MTHFD1	cis	Artery Tibial	GTEx
rs8018032	SYNE2	Cis_1M	lymphoblastoid	RTeQTL
rs8018032	MTHFD1	cis	parietal	SCAN
rs8018032	SLC38A6	cis	cerebellum	SCAN
rs8018032	ESR2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64816400-64853400	Weak transcription	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links