Variant report

Variant	rs8018154
Chromosome Location	chr14:64562635-64562636
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr14:64562441-64562748	MCF10A-Er-Src	breast:	n/a	n/a
2	POLR2A	chr14:64562544-64562767	MCF10A-Er-Src	breast:	n/a	n/a
3	MYC	chr14:64562370-64562698	MCF10A-Er-Src	breast:	n/a	n/a
4	FOS	chr14:64562492-64562697	MCF10A-Er-Src	breast:	n/a	n/a
5	FOS	chr14:64562485-64562679	MCF10A-Er-Src	breast:	n/a	n/a
6	STAT3	chr14:64562437-64562635	MCF10A-Er-Src	breast:	n/a	n/a
7	FOS	chr14:64562438-64562748	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
MIR548H1	TF binding region
SYNE2	TF binding region

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1255948	0.95[ASN][1000 genomes]
rs1255950	0.95[ASN][1000 genomes]
rs1255951	0.93[ASN][1000 genomes]
rs1255952	0.95[ASN][1000 genomes]
rs1255955	0.95[ASN][1000 genomes]
rs8007972	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv456326	chr14:64420413-64754361	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv564905	chr14:64420413-64754361	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64466600-64593200	Weak transcription	Colon Smooth Muscle	Colon
2	chr14:64481400-64574000	Weak transcription	Stomach Mucosa	stomach
3	chr14:64489400-64568600	Weak transcription	Small Intestine	intestine
4	chr14:64491200-64565200	Weak transcription	Rectal Smooth Muscle	rectum
5	chr14:64519400-64592000	Weak transcription	Fetal Brain Male	brain
6	chr14:64525400-64566600	Strong transcription	Primary T helper cells fromperipheralblood	blood
7	chr14:64526800-64577000	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr14:64528000-64567400	Weak transcription	Fetal Heart	heart
9	chr14:64529400-64566800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr14:64542800-64574000	Weak transcription	HUVEC	blood vessel
11	chr14:64542800-64575400	Weak transcription	Hela-S3	cervix
12	chr14:64543000-64576400	Weak transcription	NHDF-Ad	bronchial
13	chr14:64544000-64616200	Strong transcription	Primary T cells fromperipheralblood	blood
14	chr14:64547000-64573800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr14:64548400-64590800	Weak transcription	Stomach Smooth Muscle	stomach
16	chr14:64548600-64564800	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr14:64549600-64564000	Weak transcription	Right Ventricle	heart
18	chr14:64549600-64564200	Weak transcription	Colonic Mucosa	Colon
19	chr14:64549800-64563600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr14:64549800-64564200	Weak transcription	Esophagus	oesophagus
21	chr14:64549800-64564600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr14:64549800-64564600	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr14:64549800-64564600	Weak transcription	Spleen	Spleen
24	chr14:64549800-64570200	Weak transcription	Psoas Muscle	Psoas
25	chr14:64549800-64579800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr14:64550400-64563000	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr14:64550400-64565000	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr14:64551600-64564800	Weak transcription	Primary B cells from cord blood	blood
29	chr14:64551800-64563400	Weak transcription	Brain Germinal Matrix	brain
30	chr14:64551800-64568200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr14:64554000-64566400	Strong transcription	Dnd41	blood
32	chr14:64554000-64566600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr14:64554200-64566600	Strong transcription	Primary T helper cells PMA-I stimulated	--
34	chr14:64554400-64566600	Strong transcription	Primary neutrophils fromperipheralblood	blood
35	chr14:64554400-64576400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr14:64555000-64566400	Strong transcription	Primary T cells from cord blood	blood
37	chr14:64555800-64564600	Weak transcription	Liver	Liver
38	chr14:64556400-64563800	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr14:64556400-64566400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr14:64556600-64566400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr14:64556600-64576400	Weak transcription	NHLF	lung
42	chr14:64557000-64564200	Weak transcription	Lung	lung
43	chr14:64557000-64564200	Weak transcription	Pancreas	Pancrea
44	chr14:64557000-64564400	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr14:64557000-64577200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr14:64557200-64581200	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr14:64557400-64563200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr14:64557400-64565000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr14:64557400-64565200	Weak transcription	Gastric	stomach
50	chr14:64558200-64565400	Weak transcription	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links