Variant report

Variant	rs8018733
Chromosome Location	chr14:72860859-72860860
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11628539	1.00[LWK][hapmap]
rs17180754	1.00[LWK][hapmap]
rs2239216	0.91[MEX][hapmap]
rs3784043	1.00[LWK][hapmap]
rs7149746	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72726120	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8021101	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs847328	0.86[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs8018733	TMEM229B	cis	parietal	SCAN
rs8018733	TMED10	cis	parietal	SCAN
rs8018733	PCNX	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72857800-72862200	Strong transcription	Cortex derived primary cultured neurospheres	brain
2	chr14:72858400-72861000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr14:72860400-72862000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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