Variant report

Variant	rs80211282
Chromosome Location	chr15:78794164-78794165
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:78791381..78794333-chr15:78798862..78801849,3	MCF-7	breast:
2	chr15:78790204..78792403-chr15:78793483..78795992,2	MCF-7	breast:
3	chr15:78790366..78792147-chr15:78793354..78796412,3	K562	blood:
4	chr15:78791061..78794326-chr15:78831088..78834091,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000188266	Chromatin interaction
ENSG00000041357	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	nsv94512	chr15:78794159-78801222	Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78732200-78799400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:78755000-78794400	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr15:78755200-78794600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr15:78766000-78799200	Weak transcription	Fetal Heart	heart
5	chr15:78767800-78794200	Strong transcription	Sigmoid Colon	Sigmoid Colon
6	chr15:78772400-78794600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr15:78775600-78794400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr15:78777000-78799400	Weak transcription	Gastric	stomach
9	chr15:78779200-78799000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr15:78779400-78799200	Weak transcription	Pancreas	Pancrea
11	chr15:78780000-78794200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr15:78782000-78794400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr15:78782200-78799200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr15:78784800-78794800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr15:78785600-78799200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr15:78785600-78799200	Weak transcription	Right Ventricle	heart
17	chr15:78785600-78799400	Weak transcription	Spleen	Spleen
18	chr15:78785800-78794600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr15:78785800-78799200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr15:78787000-78794600	Strong transcription	Fetal Lung	lung
21	chr15:78787400-78795000	Strong transcription	A549	lung
22	chr15:78787400-78799200	Weak transcription	Esophagus	oesophagus
23	chr15:78787400-78799400	Weak transcription	Aorta	Aorta
24	chr15:78787800-78799200	Weak transcription	Right Atrium	heart
25	chr15:78788000-78794600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr15:78788000-78794600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr15:78788000-78794800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr15:78788000-78799200	Weak transcription	Brain Cingulate Gyrus	brain
29	chr15:78788200-78798800	Weak transcription	Fetal Brain Male	brain
30	chr15:78788400-78799200	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr15:78788600-78799200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr15:78788800-78799200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr15:78789000-78799400	Weak transcription	Small Intestine	intestine
34	chr15:78789200-78794400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr15:78789400-78794400	Strong transcription	HSMM	muscle
36	chr15:78789400-78797800	Weak transcription	HSMMtube	muscle
37	chr15:78789600-78799200	Weak transcription	Lung	lung
38	chr15:78790000-78799200	Weak transcription	Stomach Mucosa	stomach
39	chr15:78790600-78799200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr15:78790800-78799200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr15:78790800-78799200	Weak transcription	Rectal Smooth Muscle	rectum
42	chr15:78791000-78799000	Weak transcription	Brain Hippocampus Middle	brain
43	chr15:78791200-78794600	Weak transcription	Brain Germinal Matrix	brain
44	chr15:78791200-78796800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr15:78791200-78799000	Weak transcription	NHLF	lung
46	chr15:78791200-78799200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr15:78791200-78799200	Weak transcription	Brain Substantia Nigra	brain
48	chr15:78791200-78799200	Weak transcription	Colonic Mucosa	Colon
49	chr15:78791200-78799200	Weak transcription	Left Ventricle	heart
50	chr15:78791200-78799400	Weak transcription	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links