Variant report

Variant	rs802176
Chromosome Location	chr6:70876255-70876256
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:70545369..70545991-chr6:70875982..70876527,2	MCF-7	breast:
2	chr6:70813406..70814321-chr6:70875992..70876918,4	MCF-7	breast:
3	chr6:70813298..70814134-chr6:70875999..70876856,3	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1200568	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1212491	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12192985	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1474044	0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1517041	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1616745	0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs16868775	0.94[ASN][1000 genomes]
rs1753258	0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2676613	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3806066	0.94[ASN][1000 genomes]
rs4707705	0.94[ASN][1000 genomes]
rs4707706	0.94[ASN][1000 genomes]
rs476863	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs529805	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs540152	0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs552628	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs556270	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs591365	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs591421	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs595957	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs622566	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs627540	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs662828	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs671910	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6909142	0.98[ASN][1000 genomes]
rs7739562	0.94[ASN][1000 genomes]
rs7744579	0.94[ASN][1000 genomes]
rs802172	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs802173	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs802174	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs802175	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs802178	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs802180	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs802182	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs802184	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs802185	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs802187	0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs802188	0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs802189	0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9346371	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9346372	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs997953	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026151	chr6:70621616-70946967	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv933674	chr6:70663616-70973112	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv932111	chr6:70736835-71633094	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv886142	chr6:70741209-71251421	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv830683	chr6:70743422-70941190	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1015807	chr6:70874416-70913489	Strong transcription Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70856200-70899400	Weak transcription	Left Ventricle	heart
2	chr6:70875600-70876400	Enhancers	Fetal Muscle Leg	muscle
3	chr6:70875600-70879400	Strong transcription	Primary B cells from peripheral blood	blood
4	chr6:70875600-70919800	Weak transcription	GM12878-XiMat	blood
5	chr6:70875800-70876400	Weak transcription	Primary B cells from cord blood	blood
6	chr6:70875800-70876600	Enhancers	Fetal Brain Male	brain
7	chr6:70875800-70876800	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr6:70876000-70876400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
9	chr6:70876000-70876400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
10	chr6:70876000-70876400	Active TSS	HUES64 Cell Line	embryonic stem cell
11	chr6:70876000-70876400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
12	chr6:70876000-70876400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:70876000-70876400	Flanking Bivalent TSS/Enh	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr6:70876000-70876400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
15	chr6:70876000-70876400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr6:70876000-70876400	Active TSS	Brain Angular Gyrus	brain
17	chr6:70876000-70876400	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
18	chr6:70876000-70876400	Enhancers	Fetal Muscle Trunk	muscle
19	chr6:70876000-70876400	Enhancers	Placenta Amnion	Placenta Amnion
20	chr6:70876000-70876400	Active TSS	HSMM	muscle
21	chr6:70876000-70876400	Active TSS	HSMMtube	muscle
22	chr6:70876000-70876400	Flanking Active TSS	K562	blood
23	chr6:70876000-70876600	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr6:70876000-70876600	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr6:70876000-70876600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr6:70876000-70876600	Active TSS	Brain Anterior Caudate	brain
27	chr6:70876000-70876600	Active TSS	Brain Cingulate Gyrus	brain
28	chr6:70876000-70876600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
29	chr6:70876000-70876800	Active TSS	Brain Hippocampus Middle	brain
30	chr6:70876000-70876800	Active TSS	Brain Inferior Temporal Lobe	brain
31	chr6:70876200-70876400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
32	chr6:70876200-70876400	Active TSS	Cortex derived primary cultured neurospheres	brain
33	chr6:70876200-70876400	Bivalent Enhancer	Adipose Nuclei	Adipose
34	chr6:70876200-70876400	Bivalent Enhancer	Liver	Liver
35	chr6:70876200-70876400	Enhancers	Brain Germinal Matrix	brain
36	chr6:70876200-70876400	Flanking Active TSS	Fetal Kidney	kidney
37	chr6:70876200-70876400	Flanking Bivalent TSS/Enh	Pancreatic Islets	Pancreatic Islet
38	chr6:70876200-70876400	Flanking Active TSS	Fetal Lung	lung
39	chr6:70876200-70876400	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
40	chr6:70876200-70876400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
41	chr6:70876200-70876400	Bivalent/Poised TSS	Hela-S3	cervix
42	chr6:70876200-70876400	Bivalent Enhancer	NHEK	skin
43	chr6:70876200-70876600	Active TSS	iPS-15b Cell Line	embryonic stem cell
44	chr6:70876200-70876600	Enhancers	Breast Myoepithelial Primary Cells	Breast
45	chr6:70876200-70876600	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
46	chr6:70876200-70876600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr6:70876200-70876600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr6:70876200-70876600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr6:70876200-70876600	Active TSS	Brain Substantia Nigra	brain
50	chr6:70876200-70876600	Active TSS	Rectal Mucosa Donor 29	rectum

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