Variant report

Variant	rs8023335
Chromosome Location	chr15:39848622-39848623
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73387044	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049682	chr15:39657279-40027403	Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv542361	chr15:39657279-40027403	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv3373125	chr15:39691567-40061262	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv904094	chr15:39738006-39976057	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv832977	chr15:39817512-39981520	Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:39844400-39851200	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr15:39844600-39849600	Enhancers	Colon Smooth Muscle	Colon
3	chr15:39844800-39849000	Enhancers	Fetal Lung	lung
4	chr15:39845800-39849800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr15:39846600-39849600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr15:39846600-39849600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr15:39846800-39850800	Weak transcription	Pancreas	Pancrea
8	chr15:39847000-39850200	Weak transcription	Fetal Muscle Leg	muscle
9	chr15:39847200-39848800	Weak transcription	HSMM	muscle
10	chr15:39847600-39849600	Enhancers	NHEK	skin
11	chr15:39848200-39849000	Enhancers	Esophagus	oesophagus
12	chr15:39848200-39849000	Enhancers	Fetal Muscle Trunk	muscle
13	chr15:39848200-39849200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr15:39848200-39849200	Enhancers	HMEC	breast
15	chr15:39848400-39850600	Weak transcription	Fetal Thymus	thymus
16	chr15:39848600-39850800	Weak transcription	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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