Variant report

Variant	rs8023496
Chromosome Location	chr15:73355710-73355711
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:73085797..73088021-chr15:73353697..73355855,2	MCF-7	breast:
2	chr15:73354673..73357162-chr15:73385242..73388078,2	MCF-7	breast:
3	chr15:73355443..73358020-chr15:73360429..73361989,2	MCF-7	breast:
4	chr15:73348449..73350291-chr15:73354149..73355949,2	MCF-7	breast:
5	chr15:73340283..73347207-chr15:73351084..73357651,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000067141	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1678248	0.80[AFR][1000 genomes]
rs1714533	0.80[AFR][1000 genomes]
rs2680349	0.81[AFR][1000 genomes]
rs73440033	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv482421	chr15:73279141-73426897	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv904338	chr15:73313691-73483718	Enhancers Active TSS Strong transcription ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv517966	chr15:73349633-73488753	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv525462	chr15:73349633-73563495	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73347000-73358800	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr15:73349400-73367000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr15:73352000-73365000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr15:73353400-73356800	Enhancers	Brain Hippocampus Middle	brain
5	chr15:73353600-73356400	Enhancers	Brain Angular Gyrus	brain
6	chr15:73353800-73363400	Weak transcription	Aorta	Aorta
7	chr15:73353800-73366000	Weak transcription	Fetal Intestine Large	intestine
8	chr15:73353800-73367400	Weak transcription	Fetal Intestine Small	intestine
9	chr15:73354000-73359000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr15:73354400-73356000	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr15:73354400-73356600	Enhancers	Brain Anterior Caudate	brain
12	chr15:73354400-73364800	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr15:73355000-73356800	Enhancers	Brain Substantia Nigra	brain
14	chr15:73355000-73358000	Enhancers	Brain Cingulate Gyrus	brain
15	chr15:73355200-73355800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr15:73355200-73365200	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr15:73355400-73355800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr15:73355400-73356400	Weak transcription	Ovary	ovary
19	chr15:73355600-73355800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr15:73355600-73356600	Enhancers	Fetal Lung	lung
21	chr15:73355600-73365800	Weak transcription	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links