Variant report

Variant	rs8024094
Chromosome Location	chr15:74678297-74678298
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:74674587..74678748-chr15:74711681..74714409,4	K562	blood:
2	chr15:74677010..74680844-chr15:74682783..74686822,5	K562	blood:
3	chr15:74674020..74678319-chr15:74686843..74691927,9	MCF-7	breast:
4	chr15:74675588..74678002-chr15:74678167..74680672,2	K562	blood:
5	chr15:74677235..74679568-chr15:74907240..74909506,3	K562	blood:
6	chr15:74677242..74678836-chr15:74906523..74909438,2	MCF-7	breast:
7	chr15:74675197..74678908-chr15:74679707..74682707,4	K562	blood:
8	chr15:74673950..74692681-chr15:74720825..74732493,46	MCF-7	breast:
9	chr15:74667595..74674345-chr15:74676249..74682092,7	K562	blood:
10	chr15:74668501..74671132-chr15:74677010..74678903,2	K562	blood:
11	chr15:74676558..74680778-chr15:74721674..74728366,9	K562	blood:
12	chr15:74677461..74681147-chr15:74724592..74728667,7	K562	blood:

No data

Variant related genes	Relation type
ENSG00000260919	Chromatin interaction
ENSG00000138623	Chromatin interaction
ENSG00000179335	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs28362878	1.00[AMR][1000 genomes]
rs28362886	1.00[AMR][1000 genomes]
rs28362911	1.00[AMR][1000 genomes]
rs7163349	1.00[AMR][1000 genomes]
rs7170811	1.00[AMR][1000 genomes]
rs7170823	1.00[AMR][1000 genomes]
rs73431469	1.00[AMR][1000 genomes]
rs73431471	1.00[AMR][1000 genomes]
rs73432359	1.00[AMR][1000 genomes]
rs8036155	1.00[AMR][1000 genomes]
rs8042063	1.00[AMR][1000 genomes]
rs959572	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428641	chr15:74555113-74724630	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
2	nsv482615	chr15:74593625-74757962	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
3	nsv904351	chr15:74638965-74697084	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv904352	chr15:74638965-74715205	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74667400-74691200	Enhancers	Placenta	Placenta
2	chr15:74670800-74678600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr15:74672000-74678600	Weak transcription	Fetal Kidney	kidney
4	chr15:74672600-74685600	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr15:74673000-74678800	Enhancers	Osteobl	bone
6	chr15:74673000-74685000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr15:74673000-74685600	Enhancers	Placenta Amnion	Placenta Amnion
8	chr15:74673600-74679600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr15:74673600-74679600	Enhancers	Fetal Thymus	thymus
10	chr15:74673800-74679000	Enhancers	NH-A	brain
11	chr15:74673800-74680400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr15:74673800-74681000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr15:74673800-74681400	Enhancers	HMEC	breast
14	chr15:74674000-74679800	Enhancers	Muscle Satellite Cultured Cells	--
15	chr15:74674000-74682000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr15:74674400-74683000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr15:74674600-74678600	Enhancers	Stomach Mucosa	stomach
18	chr15:74674600-74678800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr15:74674600-74680200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
20	chr15:74674600-74681200	Enhancers	Primary B cells from peripheral blood	blood
21	chr15:74674600-74686200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr15:74674800-74679200	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr15:74674800-74679600	Enhancers	Thymus	Thymus
24	chr15:74675000-74678600	Enhancers	Primary T cells fromperipheralblood	blood
25	chr15:74675000-74681400	Enhancers	Spleen	Spleen
26	chr15:74675200-74678400	Enhancers	Primary T helper cells fromperipheralblood	blood
27	chr15:74675200-74678400	Weak transcription	Brain Substantia Nigra	brain
28	chr15:74675200-74678600	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr15:74675200-74678800	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr15:74675400-74678600	Weak transcription	Brain Cingulate Gyrus	brain
31	chr15:74675600-74678800	Weak transcription	Fetal Intestine Small	intestine
32	chr15:74675800-74678800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr15:74675800-74695800	Enhancers	Primary hematopoietic stem cells short term culture	blood
34	chr15:74676000-74678600	Enhancers	Primary T killer memory cells from peripheral blood	blood
35	chr15:74676000-74680000	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr15:74676000-74682400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr15:74676200-74678800	Enhancers	HSMMtube	muscle
38	chr15:74676200-74679400	Enhancers	HUVEC	blood vessel
39	chr15:74676200-74679800	Enhancers	Brain Angular Gyrus	brain
40	chr15:74676200-74679800	Enhancers	Skeletal Muscle Female	skeletal muscle
41	chr15:74676200-74681800	Enhancers	K562	blood
42	chr15:74676200-74685800	Enhancers	Primary hematopoietic stem cells	blood
43	chr15:74676400-74679000	Enhancers	Fetal Stomach	stomach
44	chr15:74676400-74679200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr15:74676400-74679400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr15:74676400-74679800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
47	chr15:74676400-74679800	Enhancers	Fetal Muscle Leg	muscle
48	chr15:74676400-74683000	Enhancers	Fetal Lung	lung
49	chr15:74676600-74678800	Enhancers	NHDF-Ad	bronchial
50	chr15:74676600-74679800	Enhancers	Brain Hippocampus Middle	brain

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