Variant report

Variant	rs8024232
Chromosome Location	chr15:33366282-33366283
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11858145	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1349964	1.00[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2604169	0.92[EUR][1000 genomes]
rs345749	0.85[CHB][hapmap];0.80[EUR][1000 genomes]
rs345752	0.85[CHB][hapmap]
rs345773	0.83[CHB][hapmap];0.91[JPT][hapmap]
rs345774	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs345790	0.81[EUR][1000 genomes]
rs345798	0.92[EUR][1000 genomes]
rs345800	0.92[EUR][1000 genomes]
rs345801	0.92[EUR][1000 genomes]
rs345804	0.91[ASN][1000 genomes]
rs4780075	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7171647	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv903979	chr15:33144202-33550256	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1052966	chr15:33149753-33541951	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv542340	chr15:33149753-33541951	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv903981	chr15:33207082-33550256	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv568918	chr15:33244672-33446971	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv903982	chr15:33282844-33616150	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33361200-33378800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr15:33361600-33375600	Weak transcription	HSMM	muscle
3	chr15:33361800-33372200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr15:33361800-33375600	Weak transcription	HSMMtube	muscle
5	chr15:33362000-33376000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr15:33362200-33372200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr15:33362600-33375000	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr15:33363800-33366800	Active TSS	Thymus	Thymus
9	chr15:33364000-33374000	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr15:33364800-33367400	Enhancers	Fetal Thymus	thymus
11	chr15:33366000-33366400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr15:33366200-33366400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr15:33366200-33366600	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr15:33366200-33366800	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr15:33366200-33367000	Strong transcription	NHLF	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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