Variant report

Variant	rs802473
Chromosome Location	chr7:86336732-86336733
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs73398483	1.00[AMR][1000 genomes]
rs802469	1.00[AMR][1000 genomes]
rs802470	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025032	chr7:86032479-86642973	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv831053	chr7:86268171-86440999	Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1025277	chr7:86299224-87206007	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
4	nsv538999	chr7:86299224-87206007	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
5	nsv532147	chr7:86299225-87121975	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
6	nsv967461	chr7:86334943-86338154	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:86331200-86337400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:86331800-86337600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:86332800-86338000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr7:86334000-86338600	Enhancers	Brain Anterior Caudate	brain
5	chr7:86334000-86342400	Enhancers	Brain Angular Gyrus	brain
6	chr7:86334400-86337400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr7:86334800-86337600	Enhancers	Brain Hippocampus Middle	brain
8	chr7:86335200-86338000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:86335200-86339000	Enhancers	Brain Cingulate Gyrus	brain
10	chr7:86335400-86337400	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr7:86335600-86337400	Enhancers	Brain Substantia Nigra	brain
12	chr7:86335600-86339000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
13	chr7:86335800-86339000	Enhancers	Brain Germinal Matrix	brain
14	chr7:86336000-86336800	Weak transcription	Fetal Brain Female	brain
15	chr7:86336200-86336800	Weak transcription	Fetal Brain Male	brain
16	chr7:86336600-86338200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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