Variant report

Variant	rs8024784
Chromosome Location	chr15:100158009-100158010
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:100142017..100143605-chr15:100156751..100158277,2	MCF-7	breast:
2	chr15:100156211..100158384-chr15:100167394..100168954,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11247113	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11247118	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11247120	0.86[AMR][1000 genomes]
rs12441844	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12593181	0.92[ASN][1000 genomes]
rs12913830	0.92[ASN][1000 genomes]
rs2033547	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2164058	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28716652	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3743180	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4965533	0.92[ASN][1000 genomes]
rs4965534	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4965536	0.93[ASN][1000 genomes]
rs59812744	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62042267	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7163683	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7176008	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7178948	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7179518	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7181767	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8030814	0.83[AMR][1000 genomes]
rs8036535	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904546	chr15:99696046-100166300	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv1036346	chr15:99752391-100365458	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv542520	chr15:99752391-100365458	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv817201	chr15:99839238-100537341	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	nsv904558	chr15:100019382-100171684	ZNF genes & repeats Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:100133000-100159200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr15:100133000-100159200	Weak transcription	A549	lung
3	chr15:100142600-100159200	Weak transcription	Gastric	stomach
4	chr15:100142800-100159200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr15:100142800-100159400	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr15:100142800-100164000	Weak transcription	Fetal Thymus	thymus
7	chr15:100142800-100176400	Weak transcription	Fetal Stomach	stomach
8	chr15:100143000-100163200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr15:100143800-100159200	Weak transcription	Lung	lung
10	chr15:100144000-100159200	Weak transcription	Fetal Muscle Leg	muscle
11	chr15:100144000-100180800	Weak transcription	Thymus	Thymus
12	chr15:100145600-100159200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr15:100146200-100159200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr15:100148600-100159200	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr15:100150800-100159200	Weak transcription	HSMM	muscle
16	chr15:100153000-100158600	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr15:100153200-100160400	Enhancers	Liver	Liver
18	chr15:100153400-100159000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr15:100153400-100159400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr15:100154000-100158200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr15:100154000-100159600	Weak transcription	Stomach Smooth Muscle	stomach
22	chr15:100155000-100159400	Weak transcription	Hela-S3	cervix
23	chr15:100155200-100158200	Enhancers	Primary T helper naive cells from peripheral blood	blood
24	chr15:100155200-100159200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr15:100155200-100159200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr15:100155200-100159200	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr15:100155200-100159200	Weak transcription	Colonic Mucosa	Colon
28	chr15:100155200-100159200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr15:100155200-100159200	Weak transcription	Pancreas	Pancrea
30	chr15:100155200-100159200	Weak transcription	NHLF	lung
31	chr15:100155200-100160600	Enhancers	Fetal Heart	heart
32	chr15:100155200-100163600	Weak transcription	Dnd41	blood
33	chr15:100155200-100191000	Weak transcription	HSMMtube	muscle
34	chr15:100155400-100158200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr15:100155400-100158400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr15:100155400-100158400	Weak transcription	Osteobl	bone
37	chr15:100155400-100158800	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr15:100155400-100158800	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr15:100155400-100159000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr15:100155400-100159200	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr15:100155400-100159200	Weak transcription	Esophagus	oesophagus
42	chr15:100155400-100159200	Weak transcription	Placenta	Placenta
43	chr15:100155400-100159400	Weak transcription	Small Intestine	intestine
44	chr15:100155400-100164200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr15:100155400-100168400	Weak transcription	Stomach Mucosa	stomach
46	chr15:100155400-100170800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr15:100155400-100180800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr15:100155600-100158600	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr15:100155600-100159200	Weak transcription	Aorta	Aorta
50	chr15:100155600-100164200	Weak transcription	Primary hematopoietic stem cells	blood

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