Variant report

Variant	rs8025353
Chromosome Location	chr15:82581805-82581806
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1045508	0.85[ASN][1000 genomes]
rs11073035	0.84[ASN][1000 genomes]
rs1174543	0.85[ASN][1000 genomes]
rs11855089	0.85[ASN][1000 genomes]
rs11855144	0.84[ASN][1000 genomes]
rs11857208	0.89[ASN][1000 genomes]
rs12443224	0.91[ASN][1000 genomes]
rs12905578	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13380317	0.94[ASN][1000 genomes]
rs13380319	0.94[ASN][1000 genomes]
rs1392976	0.84[ASN][1000 genomes]
rs1501371	0.86[ASN][1000 genomes]
rs1501372	0.88[ASN][1000 genomes]
rs1846911	0.88[ASN][1000 genomes]
rs2047678	0.91[ASN][1000 genomes]
rs2088858	0.86[ASN][1000 genomes]
rs28420834	0.85[ASN][1000 genomes]
rs28540744	0.87[ASN][1000 genomes]
rs2867579	0.87[ASN][1000 genomes]
rs3858954	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4270132	0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs4344697	0.81[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs4778982	0.87[ASN][1000 genomes]
rs6495643	0.87[ASN][1000 genomes]
rs6495647	0.81[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7164362	0.85[ASN][1000 genomes]
rs7166570	0.88[ASN][1000 genomes]
rs7169961	0.87[ASN][1000 genomes]
rs7173339	0.88[ASN][1000 genomes]
rs7173852	0.88[ASN][1000 genomes]
rs7176075	0.88[ASN][1000 genomes]
rs8033050	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8037224	0.88[ASN][1000 genomes]
rs8041868	0.85[ASN][1000 genomes]
rs8041924	0.87[ASN][1000 genomes]
rs8042464	0.89[ASN][1000 genomes]
rs8043108	0.91[ASN][1000 genomes]
rs881308	0.87[ASN][1000 genomes]
rs9944197	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv570245	chr15:82456227-82591082	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1041040	chr15:82465124-82606410	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv1801737	chr15:82468455-82589044	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv904440	chr15:82524544-82591082	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1054025	chr15:82540486-83058214	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
6	esv3414396	chr15:82581647-82777145	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS	TF binding region CpG island lncRNA	10 gene(s)	inside rSNPs	diseases
7	esv3512406	chr15:82581647-82787145	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription	TF binding region CpG island lncRNA	10 gene(s)	inside rSNPs	diseases
8	esv3512407	chr15:82581647-82787145	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs8025353	FLJ40113///LOC161527///LOC440295///LOC642346	N/A	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:82581800-82582000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr15:82581800-82582200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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