Variant report

Variant	rs8025896
Chromosome Location	chr15:83725070-83725071
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:83722988..83725127-chr15:83769654..83771635,2	K562	blood:
2	chr15:83723727..83726962-chr15:83733649..83736158,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000064726	Chromatin interaction
ENSG00000263643	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs13329298	1.00[EUR][1000 genomes]
rs28408839	0.81[AFR][1000 genomes]
rs28454771	0.81[AFR][1000 genomes]
rs28479338	0.84[AFR][1000 genomes]
rs28510490	0.97[AFR][1000 genomes]
rs28570610	0.84[AFR][1000 genomes]
rs28662361	0.97[AFR][1000 genomes]
rs28707195	0.87[AFR][1000 genomes]
rs28711332	0.81[AFR][1000 genomes]
rs28755408	0.97[AFR][1000 genomes]
rs28836869	0.94[AFR][1000 genomes]
rs9919979	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040336	chr15:83578947-83768335	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv482308	chr15:83584918-83747362	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83681600-83732000	Weak transcription	Stomach Mucosa	stomach
2	chr15:83683400-83726600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:83699000-83725800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr15:83700400-83734400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr15:83701600-83732800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:83705000-83725800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr15:83705000-83731000	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr15:83706000-83725400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr15:83706800-83726600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr15:83707000-83725400	Strong transcription	HUES64 Cell Line	embryonic stem cell
11	chr15:83707400-83725400	Strong transcription	HUES6 Cell Line	embryonic stem cell
12	chr15:83708000-83725400	Strong transcription	HUES48 Cell Line	embryonic stem cell
13	chr15:83708600-83726000	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr15:83708800-83726400	Strong transcription	Primary T cells fromperipheralblood	blood
15	chr15:83708800-83726600	Weak transcription	Pancreas	Pancrea
16	chr15:83709000-83726600	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr15:83709000-83726600	Weak transcription	Fetal Brain Male	brain
18	chr15:83709200-83727000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr15:83709600-83730800	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr15:83710600-83730200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr15:83710600-83730200	Weak transcription	Esophagus	oesophagus
22	chr15:83710800-83725800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr15:83712200-83725800	Weak transcription	Right Ventricle	heart
24	chr15:83713400-83725600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr15:83713600-83726600	Weak transcription	Gastric	stomach
26	chr15:83714200-83730200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr15:83714400-83726600	Strong transcription	Primary T helper cells fromperipheralblood	blood
28	chr15:83714800-83725800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr15:83715200-83725400	Strong transcription	Liver	Liver
30	chr15:83716200-83725400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr15:83717000-83725600	Weak transcription	Fetal Heart	heart
32	chr15:83717000-83726400	Weak transcription	Small Intestine	intestine
33	chr15:83717000-83726800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr15:83717200-83725600	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr15:83717400-83725600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr15:83717400-83725800	Weak transcription	Rectal Smooth Muscle	rectum
37	chr15:83717400-83731400	Weak transcription	Spleen	Spleen
38	chr15:83717600-83725800	Weak transcription	Brain Hippocampus Middle	brain
39	chr15:83718000-83726600	Weak transcription	Aorta	Aorta
40	chr15:83718000-83731000	Weak transcription	Colonic Mucosa	Colon
41	chr15:83718200-83725600	Weak transcription	Ovary	ovary
42	chr15:83718400-83727800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr15:83719800-83726600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr15:83719800-83729800	Weak transcription	NHEK	skin
45	chr15:83720000-83729800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr15:83720400-83725200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr15:83720400-83728600	Strong transcription	GM12878-XiMat	blood
48	chr15:83720800-83726400	Strong transcription	Fetal Muscle Leg	muscle
49	chr15:83720800-83728600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr15:83721000-83726000	Strong transcription	Fetal Thymus	thymus

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