Variant report

Variant	rs8025992
Chromosome Location	chr15:33937866-33937867
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16971773	1.00[ASN][1000 genomes]
rs16972044	1.00[ASN][1000 genomes]
rs17236399	1.00[ASN][1000 genomes]
rs2132206	1.00[ASN][1000 genomes]
rs8030043	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33915000-33959400	Weak transcription	Colon Smooth Muscle	Colon
2	chr15:33922200-33938400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr15:33923200-33955600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr15:33925800-33952600	Weak transcription	Brain Anterior Caudate	brain
5	chr15:33931000-33947000	Weak transcription	Fetal Muscle Trunk	muscle
6	chr15:33931200-33951400	Weak transcription	Spleen	Spleen
7	chr15:33932200-33938600	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr15:33932400-33938800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr15:33932800-33956000	Weak transcription	Brain Hippocampus Middle	brain
10	chr15:33933000-33976000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr15:33933400-33939200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr15:33933600-33939800	Weak transcription	Brain Germinal Matrix	brain
13	chr15:33934200-33938600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr15:33934800-33939200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr15:33936600-33938000	Strong transcription	Fetal Muscle Leg	muscle
16	chr15:33937000-33938400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr15:33937000-33955800	Weak transcription	Aorta	Aorta
18	chr15:33937200-33938000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr15:33937200-33938000	Weak transcription	Stomach Smooth Muscle	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links