Variant report

Variant	rs8026525
Chromosome Location	chr15:78473889-78473890
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11856106	0.96[EUR][1000 genomes]
rs17479031	0.96[EUR][1000 genomes]
rs17479135	0.96[EUR][1000 genomes]
rs17850484	0.96[EUR][1000 genomes]
rs45444496	0.92[EUR][1000 genomes]
rs62009344	0.96[EUR][1000 genomes]
rs62009346	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv948437	chr15:78435527-78504662	Strong transcription Bivalent Enhancer Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv904430	chr15:78466127-78507316	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs8026525	CIB2	cis	Muscle Skeletal	GTEx

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78447000-78475200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:78460200-78474200	Weak transcription	HepG2	liver
3	chr15:78464800-78475000	Weak transcription	HMEC	breast
4	chr15:78465200-78474200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr15:78465200-78475000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr15:78465200-78475600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr15:78465400-78474800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr15:78465400-78475200	Weak transcription	NHEK	skin
9	chr15:78467200-78477200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr15:78467400-78474800	Weak transcription	Fetal Brain Female	brain
11	chr15:78467400-78475400	Enhancers	Fetal Thymus	thymus
12	chr15:78470200-78477000	Weak transcription	Brain Cingulate Gyrus	brain
13	chr15:78470200-78486600	Weak transcription	Brain Hippocampus Middle	brain
14	chr15:78470400-78493800	Weak transcription	Brain Substantia Nigra	brain
15	chr15:78470600-78477200	Weak transcription	Brain Anterior Caudate	brain
16	chr15:78470600-78486600	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr15:78471200-78475800	Strong transcription	Cortex derived primary cultured neurospheres	brain
18	chr15:78472400-78475400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr15:78473600-78477200	Weak transcription	Spleen	Spleen
20	chr15:78473800-78474400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr15:78473800-78474800	Weak transcription	Thymus	Thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links