Variant report

Variant	rs8026659
Chromosome Location	chr15:51147203-51147204
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:51123963..51125552-chr15:51144556..51147356,2	MCF-7	breast:
2	chr15:51145363..51148284-chr15:51156189..51157773,2	MCF-7	breast:
3	chr15:50982593..50983166-chr15:51146663..51147514,3	MCF-7	breast:
4	chr15:51142581..51145148-chr15:51146031..51147554,2	MCF-7	breast:
5	chr15:51056859..51057885-chr15:51146594..51147514,6	MCF-7	breast:
6	chr15:51055716..51061075-chr15:51143847..51150435,12	MCF-7	breast:
7	chr15:50982658..50983185-chr15:51146936..51147497,2	MCF-7	breast:
8	chr15:51145907..51147811-chr15:51153063..51154572,2	MCF-7	breast:
9	chr15:50982548..50983158-chr15:51146956..51147497,2	MCF-7	breast:
10	chr15:50977226..50980517-chr15:51145919..51148890,5	MCF-7	breast:
11	chr15:51146489..51151645-chr15:51152863..51155538,5	K562	blood:
12	chr15:51054786..51059355-chr15:51145511..51148864,6	MCF-7	breast:
13	chr15:51147078..51149314-chr15:51153326..51155496,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000092439	Chromatin interaction
ENSG00000138600	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs28384292	1.00[AMR][1000 genomes]
rs28469428	1.00[AMR][1000 genomes]
rs28485299	1.00[AMR][1000 genomes]
rs28535266	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28538716	1.00[AMR][1000 genomes]
rs28564149	1.00[AMR][1000 genomes]
rs28763343	1.00[AMR][1000 genomes]
rs28817052	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6493468	1.00[AMR][1000 genomes]
rs7163999	1.00[AMR][1000 genomes]
rs7164674	1.00[AMR][1000 genomes]
rs7166742	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7168505	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7169184	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7169696	1.00[AMR][1000 genomes]
rs7169746	1.00[AMR][1000 genomes]
rs7170963	1.00[AMR][1000 genomes]
rs7176764	1.00[AMR][1000 genomes]
rs7177527	1.00[AMR][1000 genomes]
rs7179077	1.00[AMR][1000 genomes]
rs7179759	1.00[AMR][1000 genomes]
rs7183508	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72740488	1.00[AMR][1000 genomes]
rs8029061	1.00[AMR][1000 genomes]
rs8029899	1.00[AMR][1000 genomes]
rs8033812	1.00[AMR][1000 genomes]
rs8038031	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8038307	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043805	chr15:50715572-51208891	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
2	nsv542384	chr15:50715572-51208891	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
3	nsv1047443	chr15:50744781-51647023	Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv457134	chr15:50770868-51184583	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
5	nsv471242	chr15:50770868-51184583	Genic enhancers ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
6	nsv569396	chr15:50770868-51184583	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
7	nsv457135	chr15:50770868-51189707	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
8	nsv569397	chr15:50770868-51189707	Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
9	nsv1047039	chr15:50782070-51187804	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
10	nsv542385	chr15:50782070-51187804	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
11	nsv457136	chr15:50789125-51294995	Strong transcription ZNF genes & repeats Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
12	nsv569398	chr15:50789125-51294995	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
13	nsv1042372	chr15:50846461-51208891	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
14	nsv542386	chr15:50846461-51208891	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
15	nsv569399	chr15:50874964-51562198	Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
16	nsv569400	chr15:50874964-51767265	ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
17	nsv529339	chr15:51048579-51270372	Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
18	nsv516168	chr15:51114437-51217361	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:51146000-51148000	Enhancers	Hela-S3	cervix
2	chr15:51146000-51149200	Enhancers	Placenta	Placenta
3	chr15:51146200-51150000	Weak transcription	Psoas Muscle	Psoas
4	chr15:51146400-51147400	Enhancers	HepG2	liver
5	chr15:51146400-51147800	Enhancers	HMEC	breast
6	chr15:51146800-51147400	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr15:51146800-51147600	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr15:51146800-51147600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr15:51146800-51147600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr15:51146800-51147800	Flanking Active TSS	GM12878-XiMat	blood
11	chr15:51146800-51147800	Enhancers	K562	blood
12	chr15:51146800-51148200	Enhancers	Primary B cells from peripheral blood	blood
13	chr15:51147000-51147600	Enhancers	Placenta Amnion	Placenta Amnion
14	chr15:51147000-51147600	Enhancers	NHEK	skin
15	chr15:51147000-51147800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr15:51147000-51147800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr15:51147000-51148000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr15:51147000-51148000	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr15:51147200-51147400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr15:51147200-51147400	Enhancers	Liver	Liver
21	chr15:51147200-51147400	Enhancers	Fetal Kidney	kidney
22	chr15:51147200-51147600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr15:51147200-51147600	Enhancers	A549	lung
24	chr15:51147200-51147600	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr15:51147200-51148800	Weak transcription	Aorta	Aorta
26	chr15:51147200-51150000	Weak transcription	Sigmoid Colon	Sigmoid Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links