Variant report

Variant	rs8027239
Chromosome Location	chr15:75975804-75975805
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:75870147..75872073-chr15:75974509..75976090,2	MCF-7	breast:
2	chr15:75930426..75930987-chr15:75975796..75976727,3	MCF-7	breast:
3	chr15:75967780..75970635-chr15:75975258..75976965,2	K562	blood:
4	chr15:75801019..75801846-chr15:75975674..75976616,2	MCF-7	breast:
5	chr15:75658746..75661779-chr15:75974591..75977413,4	MCF-7	breast:
6	chr15:75746464..75749152-chr15:75974484..75977471,5	MCF-7	breast:
7	chr15:75799442..75801004-chr15:75975056..75976624,2	MCF-7	breast:
8	chr15:75868253..75872057-chr15:75972710..75976290,5	MCF-7	breast:
9	chr15:75746178..75749650-chr15:75973280..75976142,3	MCF-7	breast:
10	chr15:75953724..75957700-chr15:75974147..75976350,4	MCF-7	breast:
11	chr15:75969135..75972026-chr15:75974754..75976965,2	K562	blood:
12	chr15:75889918..75890742-chr15:75975684..75976291,2	K562	blood:
13	chr15:75660217..75660799-chr15:75975793..75976725,5	K562	blood:
14	chr15:75975803..75976315-chr15:78195454..78196010,2	K562	blood:
15	chr15:75973092..75975055-chr15:75975527..75978110,2	MCF-7	breast:
16	chr15:75938747..75943497-chr15:75972470..75976419,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000203392	Chromatin interaction
ENSG00000177971	Chromatin interaction
ENSG00000140400	Chromatin interaction
ENSG00000260892	Chromatin interaction
ENSG00000173548	Chromatin interaction
ENSG00000260274	Chromatin interaction
ENSG00000169410	Chromatin interaction
ENSG00000169375	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1127646	0.84[EUR][1000 genomes]
rs1127648	0.81[EUR][1000 genomes]
rs11631648	0.87[EUR][1000 genomes]
rs11634497	0.80[EUR][1000 genomes]
rs11636221	0.87[EUR][1000 genomes]
rs11636280	0.87[EUR][1000 genomes]
rs11636352	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12898809	0.84[EUR][1000 genomes]
rs12900539	0.82[EUR][1000 genomes]
rs4414463	0.87[EUR][1000 genomes]
rs4592617	0.84[EUR][1000 genomes]
rs7182902	0.81[EUR][1000 genomes]
rs8030131	0.85[EUR][1000 genomes]
rs8034760	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531901	chr15:75600108-76019966	Genic enhancers Flanking Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
2	esv3445070	chr15:75623136-76045948	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	nsv1048028	chr15:75637515-76019967	Strong transcription Genic enhancers Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	161 gene(s)	inside rSNPs	diseases
4	nsv542436	chr15:75637515-76019967	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	161 gene(s)	inside rSNPs	diseases
5	esv1800424	chr15:75692303-75991451	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	124 gene(s)	inside rSNPs	diseases
6	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
7	esv1813854	chr15:75898640-76002392	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
8	nsv527186	chr15:75924443-76107730	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	69 gene(s)	inside rSNPs	diseases
9	nsv904391	chr15:75930757-76001654	Weak transcription Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
10	nsv904392	chr15:75930757-76039262	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
11	nsv904393	chr15:75932177-76001654	Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
12	nsv904394	chr15:75948671-76039262	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
13	nsv904395	chr15:75957928-75984095	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
14	nsv904396	chr15:75961518-76071105	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
15	nsv569997	chr15:75965169-75991451	Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
16	nsv984092	chr15:75970252-76000687	Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75965600-75978400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr15:75965800-75986000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr15:75966400-75979000	Weak transcription	HMEC	breast
4	chr15:75966400-75993200	Weak transcription	Hela-S3	cervix
5	chr15:75966600-75986000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr15:75966800-75985600	Weak transcription	Osteobl	bone
7	chr15:75967400-75976600	Weak transcription	NH-A	brain
8	chr15:75968000-75985600	Strong transcription	Fetal Stomach	stomach
9	chr15:75968200-75985800	Weak transcription	Left Ventricle	heart
10	chr15:75968400-75976800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr15:75968400-75984600	Strong transcription	NHLF	lung
12	chr15:75968400-75985000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr15:75968400-75985600	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr15:75968600-75976000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr15:75968600-75978000	Strong transcription	Aorta	Aorta
16	chr15:75968800-75980400	Weak transcription	Brain Substantia Nigra	brain
17	chr15:75968800-75985600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr15:75969200-75980000	Weak transcription	Lung	lung
19	chr15:75969200-75985800	Weak transcription	Right Atrium	heart
20	chr15:75969600-75987600	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr15:75970000-75980400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr15:75970000-75985800	Weak transcription	Esophagus	oesophagus
23	chr15:75970600-75976000	Weak transcription	Duodenum Mucosa	Duodenum
24	chr15:75970600-75976000	Weak transcription	Ovary	ovary
25	chr15:75970600-75985800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr15:75971600-75976000	Strong transcription	Stomach Smooth Muscle	stomach
27	chr15:75971600-75977400	Strong transcription	Skeletal Muscle Female	skeletal muscle
28	chr15:75972000-75976000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr15:75972000-75979800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr15:75972800-75976000	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr15:75973000-75985600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr15:75974400-75976800	Weak transcription	Rectal Smooth Muscle	rectum
33	chr15:75974600-75976200	Enhancers	Liver	Liver
34	chr15:75974600-75976600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr15:75974600-75976600	Weak transcription	Fetal Lung	lung
36	chr15:75974600-75976800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr15:75974800-75977400	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr15:75975000-75976600	Weak transcription	NHDF-Ad	bronchial
39	chr15:75975000-75978800	Weak transcription	Pancreas	Pancrea
40	chr15:75975000-75980000	Weak transcription	Gastric	stomach
41	chr15:75975000-75980000	Weak transcription	Right Ventricle	heart
42	chr15:75975200-75976800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr15:75975400-75976200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
44	chr15:75975400-75979800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr15:75975600-75976000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
46	chr15:75975600-75977400	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr15:75975600-75977400	Genic enhancers	Skeletal Muscle Male	skeletal muscle
48	chr15:75975800-75976000	Enhancers	iPS-18 Cell Line	embryonic stem cell
49	chr15:75975800-75976000	Enhancers	iPS-20b Cell Line	embryonic stem cell
50	chr15:75975800-75976000	Enhancers	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links