Variant report

Variant	rs802754
Chromosome Location	chr6:128261543-128261544
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1089650	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1089655	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs149805	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs156060	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs156065	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs198526	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs198527	0.88[ASN][1000 genomes]
rs270016	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs270017	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs270018	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs270019	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs270020	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs270021	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs436868	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs802705	0.83[EUR][1000 genomes]
rs802706	0.86[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs802707	0.86[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs802710	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs802714	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1849854	chr6:128143774-128287313	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1024516	chr6:128184182-128298278	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128254200-128271400	Weak transcription	Thymus	Thymus
2	chr6:128260200-128261800	Enhancers	Brain Hippocampus Middle	brain
3	chr6:128261000-128262200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:128261000-128262600	Weak transcription	Stomach Mucosa	stomach
5	chr6:128261200-128262600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr6:128261400-128261600	Enhancers	Primary T cells fromperipheralblood	blood
7	chr6:128261400-128264200	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr6:128261400-128271200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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