Variant report

Variant	rs8028048
Chromosome Location	chr15:57871662-57871663
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs8030236	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv1054547	chr15:57600488-57977659	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv904255	chr15:57790436-57907574	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57868000-57873800	Weak transcription	Fetal Lung	lung
2	chr15:57869400-57872000	Enhancers	HUVEC	blood vessel
3	chr15:57869800-57875000	Enhancers	Fetal Intestine Small	intestine
4	chr15:57869800-57875000	Enhancers	Sigmoid Colon	Sigmoid Colon
5	chr15:57869800-57875200	Enhancers	Fetal Intestine Large	intestine
6	chr15:57870200-57872000	Weak transcription	Lung	lung
7	chr15:57870200-57873800	Enhancers	Duodenum Mucosa	Duodenum
8	chr15:57870600-57871800	Enhancers	Stomach Mucosa	stomach
9	chr15:57870600-57872000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr15:57870800-57872200	Enhancers	Colonic Mucosa	Colon
11	chr15:57870800-57874800	Enhancers	Small Intestine	intestine
12	chr15:57871200-57872000	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr15:57871400-57872600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr15:57871600-57872600	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr15:57871600-57874400	Enhancers	Gastric	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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