Variant report

Variant	rs8028382
Chromosome Location	chr15:92413308-92413309
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92409282..92412170-chr15:92413034..92414861,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs4537992	0.81[GIH][hapmap]
rs6496877	0.90[JPT][hapmap]
rs6496878	0.90[JPT][hapmap]
rs7179958	0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92398800-92413400	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr15:92401000-92415400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr15:92401200-92415000	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr15:92403200-92413400	Enhancers	Primary T cells fromperipheralblood	blood
5	chr15:92404400-92433600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr15:92405200-92413400	Enhancers	Left Ventricle	heart
7	chr15:92406400-92413400	Enhancers	Right Ventricle	heart
8	chr15:92408400-92414800	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr15:92409600-92430800	Weak transcription	Colon Smooth Muscle	Colon
10	chr15:92410400-92414400	Weak transcription	Primary hematopoietic stem cells	blood
11	chr15:92410600-92413400	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr15:92410600-92415400	Weak transcription	Esophagus	oesophagus
13	chr15:92410600-92445400	Weak transcription	Aorta	Aorta
14	chr15:92411200-92413600	Enhancers	Brain Hippocampus Middle	brain
15	chr15:92411200-92414800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr15:92411200-92416200	Weak transcription	Fetal Lung	lung
17	chr15:92411200-92418400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr15:92411200-92418400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr15:92411200-92421800	Weak transcription	Fetal Brain Female	brain
20	chr15:92411200-92430600	Weak transcription	Colonic Mucosa	Colon
21	chr15:92411200-92431000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr15:92411400-92415200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr15:92411400-92415600	Weak transcription	Fetal Stomach	stomach
24	chr15:92411400-92416000	Weak transcription	Brain Angular Gyrus	brain
25	chr15:92411600-92413400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr15:92411600-92414400	Weak transcription	Ovary	ovary
27	chr15:92411600-92416600	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr15:92411600-92430600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr15:92411600-92430600	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr15:92411800-92419600	Weak transcription	NHLF	lung
31	chr15:92412000-92413400	Weak transcription	A549	lung
32	chr15:92412000-92414200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr15:92412000-92414400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr15:92412000-92414400	Weak transcription	Fetal Thymus	thymus
35	chr15:92412000-92415200	Weak transcription	NHEK	skin
36	chr15:92412000-92421600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr15:92412000-92425200	Weak transcription	Stomach Smooth Muscle	stomach
38	chr15:92412000-92425800	Weak transcription	Lung	lung
39	chr15:92412000-92426200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr15:92412200-92413600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr15:92412600-92413400	Enhancers	Primary monocytes fromperipheralblood	blood
42	chr15:92412600-92413400	Enhancers	Brain Cingulate Gyrus	brain
43	chr15:92412600-92415000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
44	chr15:92412600-92415000	Enhancers	Primary T killer memory cells from peripheral blood	blood
45	chr15:92412800-92413400	Enhancers	Brain Substantia Nigra	brain
46	chr15:92413000-92413400	Enhancers	Fetal Heart	heart
47	chr15:92413000-92413400	Enhancers	Monocytes-CD14+_RO01746	blood
48	chr15:92413000-92414400	Weak transcription	HMEC	breast
49	chr15:92413000-92414800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
50	chr15:92413000-92422200	Weak transcription	Adipose Nuclei	Adipose

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