Variant report

Variant	rs8028513
Chromosome Location	chr15:75398963-75398964
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:75397387..75399012-chr15:75399789..75402626,2	MCF-7	breast:
2	chr15:75396160..75400460-chr15:75492544..75495531,4	MCF-7	breast:
3	chr15:75393099..75394810-chr15:75397322..75398967,2	K562	blood:
4	chr15:75397784..75400283-chr15:75400579..75402865,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000167173	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569993	chr15:75242155-75483752	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
2	nsv457205	chr15:75336729-75447773	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv569994	chr15:75336729-75447773	Genic enhancers Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv904383	chr15:75382542-75520378	Weak transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
5	esv1796196	chr15:75389382-75531124	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
6	nsv1039713	chr15:75394213-75674389	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75395400-75403400	Enhancers	Placenta	Placenta
2	chr15:75395600-75405800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr15:75396600-75401400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr15:75396600-75402200	Enhancers	HUVEC	blood vessel
5	chr15:75396600-75405600	Enhancers	Primary hematopoietic stem cells	blood
6	chr15:75396600-75406200	Enhancers	Primary B cells from cord blood	blood
7	chr15:75397000-75399000	Enhancers	NHDF-Ad	bronchial
8	chr15:75397000-75399200	Enhancers	Osteobl	bone
9	chr15:75397000-75403600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr15:75397400-75399200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr15:75397400-75400800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr15:75397600-75400600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr15:75397600-75400600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr15:75397600-75400600	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr15:75397600-75400600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr15:75397600-75400800	Weak transcription	Right Ventricle	heart
17	chr15:75397600-75400800	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr15:75397600-75401400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr15:75397600-75406800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr15:75397600-75415800	Weak transcription	Ovary	ovary
21	chr15:75397800-75399000	Enhancers	Muscle Satellite Cultured Cells	--
22	chr15:75397800-75400000	Weak transcription	NHLF	lung
23	chr15:75397800-75400200	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr15:75397800-75400400	Enhancers	Primary neutrophils fromperipheralblood	blood
25	chr15:75397800-75400400	Enhancers	GM12878-XiMat	blood
26	chr15:75397800-75400600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr15:75397800-75400600	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr15:75397800-75400800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr15:75397800-75400800	Weak transcription	Fetal Muscle Leg	muscle
30	chr15:75397800-75400800	Weak transcription	Left Ventricle	heart
31	chr15:75397800-75402400	Weak transcription	Brain Hippocampus Middle	brain
32	chr15:75398000-75399200	Enhancers	Hela-S3	cervix
33	chr15:75398000-75399800	Weak transcription	Fetal Thymus	thymus
34	chr15:75398000-75400200	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr15:75398000-75400400	Enhancers	Primary hematopoietic stem cells short term culture	blood
36	chr15:75398000-75400600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr15:75398000-75400600	Weak transcription	HSMMtube	muscle
38	chr15:75398000-75400800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr15:75398000-75400800	Weak transcription	Esophagus	oesophagus
40	chr15:75398000-75401000	Enhancers	Monocytes-CD14+_RO01746	blood
41	chr15:75398000-75401600	Weak transcription	Small Intestine	intestine
42	chr15:75398000-75403000	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr15:75398000-75403200	Weak transcription	Pancreas	Pancrea
44	chr15:75398200-75400800	Weak transcription	Fetal Intestine Small	intestine
45	chr15:75398400-75399000	Flanking Active TSS	A549	lung
46	chr15:75398600-75399800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr15:75398600-75399800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr15:75398600-75399800	Weak transcription	NH-A	brain
49	chr15:75398600-75400600	Weak transcription	Adipose Nuclei	Adipose
50	chr15:75398600-75400600	Weak transcription	Fetal Intestine Large	intestine

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