Variant report

Variant	rs8028548
Chromosome Location	chr15:41252917-41252918
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:41196325..41199038-chr15:41249965..41253557,4	K562	blood:
2	chr15:41251504..41254732-chr15:41263210..41265996,3	K562	blood:
3	chr15:41212940..41214641-chr15:41251110..41253337,2	K562	blood:
4	chr15:41224639..41226841-chr15:41251663..41253494,2	MCF-7	breast:
5	chr15:41220599..41223039-chr15:41251392..41253902,3	MCF-7	breast:
6	chr15:41195848..41199038-chr15:41251277..41253557,3	K562	blood:

Variant related genes	Relation type
ENSG00000128917	Chromatin interaction
ENSG00000251161	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11070311	0.87[ASN][1000 genomes]
rs12385938	0.84[ASN][1000 genomes]
rs2412576	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3887640	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56245453	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60623955	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904101	chr15:40979651-41275014	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	esv1819092	chr15:41017682-41255750	Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
3	nsv904103	chr15:41123172-41275014	Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
4	nsv904105	chr15:41149824-41275014	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
5	nsv904106	chr15:41221067-41259523	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
6	esv1794127	chr15:41245289-41276158	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41246400-41268200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr15:41246600-41253400	Enhancers	Fetal Muscle Leg	muscle
3	chr15:41246600-41258200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr15:41246600-41270000	Weak transcription	HUVEC	blood vessel
5	chr15:41246800-41253000	Weak transcription	A549	lung
6	chr15:41246800-41268000	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr15:41246800-41268200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr15:41247400-41253600	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr15:41248400-41254200	Weak transcription	Osteobl	bone
10	chr15:41249000-41258400	Weak transcription	K562	blood
11	chr15:41249400-41266000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr15:41249400-41268000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr15:41249600-41258600	Weak transcription	NHLF	lung
14	chr15:41250000-41258400	Weak transcription	Right Atrium	heart
15	chr15:41250000-41264400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr15:41250200-41253400	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr15:41250200-41255400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr15:41250600-41253000	Weak transcription	Esophagus	oesophagus
19	chr15:41250600-41258200	Weak transcription	Left Ventricle	heart
20	chr15:41250600-41258600	Weak transcription	Aorta	Aorta
21	chr15:41250800-41258000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr15:41250800-41258200	Weak transcription	HSMMtube	muscle
23	chr15:41251000-41253400	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr15:41251400-41253400	Enhancers	H1 Cell Line	embryonic stem cell
25	chr15:41251800-41253000	Enhancers	Hela-S3	cervix
26	chr15:41251800-41253400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr15:41251800-41253600	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr15:41251800-41253600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
29	chr15:41252000-41253000	Enhancers	Primary hematopoietic stem cells	blood
30	chr15:41252000-41253200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
31	chr15:41252000-41253600	Enhancers	Spleen	Spleen
32	chr15:41252200-41253000	Enhancers	iPS-15b Cell Line	embryonic stem cell
33	chr15:41252400-41253600	Enhancers	Lung	lung
34	chr15:41252400-41253600	Enhancers	Rectal Mucosa Donor 31	rectum
35	chr15:41252400-41253800	Enhancers	Placenta	Placenta
36	chr15:41252400-41253800	Enhancers	Stomach Mucosa	stomach
37	chr15:41252400-41269400	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr15:41252600-41253200	Enhancers	Duodenum Mucosa	Duodenum
39	chr15:41252600-41253400	Enhancers	Sigmoid Colon	Sigmoid Colon
40	chr15:41252600-41253600	Enhancers	Colonic Mucosa	Colon
41	chr15:41252600-41253600	Enhancers	Right Ventricle	heart
42	chr15:41252600-41258400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr15:41252800-41253000	Bivalent Enhancer	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr15:41252800-41253200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr15:41252800-41253200	Enhancers	Rectal Mucosa Donor 29	rectum
46	chr15:41252800-41253400	Enhancers	Fetal Intestine Small	intestine
47	chr15:41252800-41253600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr15:41252800-41253600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr15:41252800-41258200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr15:41252800-41258400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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