Variant report

Variant	rs80297188
Chromosome Location	chr5:16523840-16523841
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:16522409..16525329-chr5:16526389..16528895,4	K562	blood:
2	chr5:16521375..16523909-chr5:16526389..16530359,4	K562	blood:
3	chr5:16514469..16516231-chr5:16522718..16524786,2	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881187	chr5:16514269-16654960	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3448811	chr5:16523553-16524147	Weak transcription Enhancers Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16509200-16524200	Weak transcription	Brain Cingulate Gyrus	brain
2	chr5:16509600-16528800	Weak transcription	Brain Hippocampus Middle	brain
3	chr5:16516000-16540800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr5:16519800-16531400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr5:16520000-16524000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr5:16520200-16524000	Weak transcription	Brain Substantia Nigra	brain
7	chr5:16520200-16524200	Weak transcription	Brain Angular Gyrus	brain
8	chr5:16520200-16525000	Weak transcription	Gastric	stomach
9	chr5:16520600-16524800	Weak transcription	Thymus	Thymus
10	chr5:16521000-16524400	Enhancers	Fetal Heart	heart
11	chr5:16521600-16539600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr5:16522000-16524200	Strong transcription	Primary T cells from cord blood	blood
13	chr5:16522200-16524000	Weak transcription	Right Ventricle	heart
14	chr5:16522200-16525400	Weak transcription	Lung	lung
15	chr5:16522200-16528800	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr5:16522400-16524000	Weak transcription	Left Ventricle	heart
17	chr5:16522400-16524200	Enhancers	Rectal Mucosa Donor 29	rectum
18	chr5:16522400-16524200	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr5:16522400-16529000	Weak transcription	Stomach Mucosa	stomach
20	chr5:16522400-16567400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr5:16522600-16528400	Weak transcription	Duodenum Mucosa	Duodenum
22	chr5:16522600-16530000	Weak transcription	Right Atrium	heart
23	chr5:16523000-16524400	Enhancers	Sigmoid Colon	Sigmoid Colon
24	chr5:16523000-16525000	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr5:16523200-16524600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
26	chr5:16523200-16524800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr5:16523400-16525800	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr5:16523400-16540800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr5:16523600-16524000	Weak transcription	Fetal Intestine Small	intestine
30	chr5:16523600-16524200	Weak transcription	Colonic Mucosa	Colon
31	chr5:16523600-16533800	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr5:16523600-16535400	Weak transcription	Pancreas	Pancrea
33	chr5:16523800-16524800	Weak transcription	Fetal Brain Female	brain
34	chr5:16523800-16528600	Weak transcription	Fetal Intestine Large	intestine
35	chr5:16523800-16539000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr5:16523800-16540800	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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