Variant report

Variant	rs8029781
Chromosome Location	chr15:33651012-33651013
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16969954	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16970001	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17236056	1.00[CHB][hapmap]
rs1913425	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4780111	1.00[CHB][hapmap]
rs7171077	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74005183	1.00[ASN][1000 genomes]
rs74005184	1.00[ASN][1000 genomes]
rs74005186	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74005189	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8037480	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533346	chr15:33469439-33809641	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv832963	chr15:33514798-33712442	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv832964	chr15:33608771-33784018	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv568919	chr15:33638335-33736683	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33644600-33701600	Weak transcription	Aorta	Aorta
2	chr15:33649200-33651200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr15:33649600-33651600	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr15:33649800-33651200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr15:33650000-33651200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr15:33650000-33651200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr15:33650000-33651200	Enhancers	Brain Germinal Matrix	brain
8	chr15:33650000-33651200	Enhancers	Fetal Muscle Leg	muscle
9	chr15:33650000-33651400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr15:33650000-33651400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr15:33650000-33651400	Enhancers	HMEC	breast
12	chr15:33650000-33651400	Enhancers	HSMM	muscle
13	chr15:33650200-33651400	Enhancers	Brain Substantia Nigra	brain
14	chr15:33650400-33651200	Enhancers	Muscle Satellite Cultured Cells	--
15	chr15:33650600-33651400	Enhancers	HSMMtube	muscle
16	chr15:33650600-33651600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr15:33650600-33652400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr15:33650600-33666800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr15:33650800-33651200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr15:33651000-33651200	Enhancers	NH-A	brain

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