Variant report

Variant	rs8029793
Chromosome Location	chr15:75884686-75884687
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11556266	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56318551	1.00[AMR][1000 genomes]
rs56993051	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58761842	1.00[AMR][1000 genomes]
rs61135277	1.00[AMR][1000 genomes]
rs74023974	1.00[AMR][1000 genomes]
rs74023990	1.00[AMR][1000 genomes]
rs74023995	1.00[AMR][1000 genomes]
rs74023998	1.00[AMR][1000 genomes]
rs74026504	1.00[AMR][1000 genomes]
rs74026511	1.00[AMR][1000 genomes]
rs74026512	1.00[AMR][1000 genomes]
rs74026514	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531901	chr15:75600108-76019966	Genic enhancers Flanking Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
2	esv3445070	chr15:75623136-76045948	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	nsv530345	chr15:75628556-75951011	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
4	nsv1048028	chr15:75637515-76019967	Strong transcription Genic enhancers Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	161 gene(s)	inside rSNPs	diseases
5	nsv542436	chr15:75637515-76019967	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	161 gene(s)	inside rSNPs	diseases
6	nsv482802	chr15:75686519-75899896	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
7	esv1800424	chr15:75692303-75991451	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	124 gene(s)	inside rSNPs	diseases
8	nsv531902	chr15:75724505-75919237	Flanking Active TSS Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75872200-75888600	Weak transcription	Aorta	Aorta
2	chr15:75872400-75885800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:75872400-75886000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr15:75872400-75886000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr15:75872400-75886600	Weak transcription	Primary B cells from cord blood	blood
6	chr15:75872400-75886600	Weak transcription	Brain Anterior Caudate	brain
7	chr15:75872400-75886600	Weak transcription	Brain Cingulate Gyrus	brain
8	chr15:75872400-75886600	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr15:75872400-75886600	Weak transcription	NH-A	brain
10	chr15:75872400-75886800	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr15:75872400-75886800	Weak transcription	Fetal Lung	lung
12	chr15:75872400-75887600	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr15:75872400-75887800	Weak transcription	Brain Angular Gyrus	brain
14	chr15:75872400-75887800	Weak transcription	Lung	lung
15	chr15:75872400-75888000	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr15:75872400-75888000	Weak transcription	Brain Substantia Nigra	brain
17	chr15:75872400-75888200	Weak transcription	NHLF	lung
18	chr15:75872400-75888400	Weak transcription	Fetal Kidney	kidney
19	chr15:75872400-75889600	Weak transcription	Rectal Smooth Muscle	rectum
20	chr15:75872400-75890600	Weak transcription	Psoas Muscle	Psoas
21	chr15:75872400-75891600	Weak transcription	Pancreas	Pancrea
22	chr15:75872400-75892000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr15:75872400-75898600	Weak transcription	Small Intestine	intestine
24	chr15:75872600-75886000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr15:75872600-75886000	Weak transcription	Fetal Brain Female	brain
26	chr15:75872600-75886000	Weak transcription	Fetal Thymus	thymus
27	chr15:75872600-75886200	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr15:75872600-75886200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr15:75872600-75886400	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr15:75872600-75886600	Weak transcription	Primary T helper cells fromperipheralblood	blood
31	chr15:75872600-75886600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr15:75872600-75886600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr15:75872600-75886600	Weak transcription	Duodenum Mucosa	Duodenum
34	chr15:75872600-75886600	Weak transcription	Thymus	Thymus
35	chr15:75872600-75886800	Weak transcription	A549	lung
36	chr15:75872600-75888000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr15:75872600-75888600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr15:75872600-75888800	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr15:75872600-75889200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr15:75872600-75889400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr15:75872600-75889600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr15:75872600-75889600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr15:75872600-75889800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr15:75872800-75888000	Weak transcription	Dnd41	blood
45	chr15:75876800-75886800	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr15:75876800-75886800	Weak transcription	Osteobl	bone
47	chr15:75876800-75887600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr15:75876800-75887800	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr15:75876800-75888000	Weak transcription	HMEC	breast
50	chr15:75876800-75889200	Weak transcription	HepG2	liver

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