Variant report

Variant	rs8029907
Chromosome Location	chr15:83237478-83237479
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:83229558..83232531-chr15:83236614..83238235,2	K562	blood:
2	chr15:83236014..83238292-chr15:83349885..83351616,2	MCF-7	breast:
3	chr15:83234815..83238335-chr15:83239517..83241616,4	K562	blood:
4	chr15:83218421..83221235-chr15:83235743..83238150,2	K562	blood:

Variant related genes	Relation type
ENSG00000103723	Chromatin interaction
ENSG00000214575	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2163545	0.95[AFR][1000 genomes]
rs6603032	0.81[AFR][1000 genomes]
rs7169145	0.80[YRI][hapmap];0.95[AFR][1000 genomes]
rs7175198	0.95[AFR][1000 genomes]
rs7179695	0.80[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7182394	0.80[YRI][hapmap];0.95[AFR][1000 genomes]
rs8029925	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427965	chr15:82741381-83310525	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	nsv428309	chr15:82741381-83310525	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	esv2758391	chr15:82879646-83310525	Bivalent Enhancer Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
4	esv2760046	chr15:82879646-83310525	Strong transcription Enhancers Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv1035899	chr15:83108446-83315731	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv833071	chr15:83123646-83310510	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83219000-83239400	Weak transcription	Colon Smooth Muscle	Colon
2	chr15:83219800-83239800	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr15:83222000-83239200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr15:83222200-83237800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr15:83222600-83239400	Weak transcription	Fetal Stomach	stomach
6	chr15:83222600-83239600	Weak transcription	Ovary	ovary
7	chr15:83222600-83239600	Weak transcription	Rectal Smooth Muscle	rectum
8	chr15:83222800-83240600	Weak transcription	Aorta	Aorta
9	chr15:83223800-83239600	Weak transcription	Brain Substantia Nigra	brain
10	chr15:83224800-83239800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr15:83232200-83239400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr15:83232600-83239600	Weak transcription	Fetal Lung	lung
13	chr15:83234000-83238600	Weak transcription	Brain Hippocampus Middle	brain
14	chr15:83234200-83238800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr15:83234400-83237600	Weak transcription	Brain Anterior Caudate	brain
16	chr15:83234400-83239400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr15:83234400-83239800	Weak transcription	HSMMtube	muscle
18	chr15:83234600-83239600	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr15:83234600-83239800	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr15:83234600-83239800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr15:83234800-83238800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr15:83234800-83239400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr15:83234800-83239400	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr15:83234800-83239600	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr15:83235800-83239400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr15:83235800-83239600	Weak transcription	Stomach Smooth Muscle	stomach
27	chr15:83236000-83237600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr15:83236000-83239200	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr15:83236000-83239200	Weak transcription	NHLF	lung
30	chr15:83236000-83239400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr15:83236000-83239600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr15:83236000-83239600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr15:83236000-83239600	Weak transcription	NH-A	brain
34	chr15:83236000-83243600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr15:83236200-83238600	Weak transcription	Osteobl	bone
36	chr15:83236200-83239400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr15:83236400-83237800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr15:83236400-83238200	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr15:83236600-83238200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr15:83237000-83239400	Active TSS	Brain Inferior Temporal Lobe	brain
41	chr15:83237200-83238600	Weak transcription	NHDF-Ad	bronchial
42	chr15:83237200-83239200	Weak transcription	K562	blood
43	chr15:83237200-83239400	Active TSS	Brain Cingulate Gyrus	brain
44	chr15:83237200-83239600	Active TSS	Brain Angular Gyrus	brain
45	chr15:83237400-83237600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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