Variant report

Variant	rs803046
Chromosome Location	chr3:191176249-191176250
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:191154549..191157264-chr3:191174503..191176538,3	K562	blood:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1066869	0.94[ASN][1000 genomes]
rs1398714	0.89[ASN][1000 genomes]
rs1656126	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1715645	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs176823	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs186067	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs293822	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs293825	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs293826	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs293829	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs293830	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs293831	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs293832	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs293833	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs293834	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs293836	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs36140752	0.80[ASN][1000 genomes]
rs375607	0.87[ASN][1000 genomes]
rs383815	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs393745	0.89[ASN][1000 genomes]
rs396381	0.89[ASN][1000 genomes]
rs398498	0.89[ASN][1000 genomes]
rs401085	0.89[ASN][1000 genomes]
rs404846	0.89[ASN][1000 genomes]
rs405736	0.89[ASN][1000 genomes]
rs406821	0.94[ASN][1000 genomes]
rs408085	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs409461	0.89[ASN][1000 genomes]
rs410829	0.88[ASN][1000 genomes]
rs417805	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs422820	0.89[ASN][1000 genomes]
rs425783	0.89[ASN][1000 genomes]
rs426356	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs431095	0.89[ASN][1000 genomes]
rs431446	0.89[ASN][1000 genomes]
rs431601	0.89[ASN][1000 genomes]
rs438356	0.89[ASN][1000 genomes]
rs441207	0.89[ASN][1000 genomes]
rs445237	0.89[ASN][1000 genomes]
rs447463	0.89[ASN][1000 genomes]
rs453387	0.89[ASN][1000 genomes]
rs489779	0.89[ASN][1000 genomes]
rs534424	0.89[ASN][1000 genomes]
rs540805	0.89[ASN][1000 genomes]
rs542533	0.89[ASN][1000 genomes]
rs544522	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs545100	0.89[ASN][1000 genomes]
rs545989	0.89[ASN][1000 genomes]
rs547147	0.89[ASN][1000 genomes]
rs552942	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs566578	0.89[ASN][1000 genomes]
rs572324	0.89[ASN][1000 genomes]
rs6444544	0.89[ASN][1000 genomes]
rs68072965	0.89[AMR][1000 genomes]
rs709146	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7638813	0.80[ASN][1000 genomes]
rs803045	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs810634	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931943	chr3:190860224-191321873	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv2757910	chr3:190867011-191279107	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2759209	chr3:190867011-191279107	Weak transcription Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv428428	chr3:190936834-191215596	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv534269	chr3:191037181-191261730	Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	esv3432654	chr3:191161299-191183570	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv878108	chr3:191175215-191223664	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:191174000-191176400	Weak transcription	Stomach Mucosa	stomach
2	chr3:191175400-191190200	Weak transcription	K562	blood

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