Variant report

Variant	rs80308797
Chromosome Location	chr11:32954417-32954418
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:32953786-32957576	K562	blood:	n/a	n/a
2	POLR2A	chr11:32954388-32954435	MCF-7	breast:	n/a	n/a

Variant related genes	Relation type
QSER1	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758262	chr11:32714643-33049940	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	esv2759815	chr11:32714643-33049940	Flanking Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
3	esv2757434	chr11:32792784-32958609	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	esv34742	chr11:32796092-33004024	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
5	esv2753057	chr11:32796124-33061724	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
6	esv2753743	chr11:32796124-33084924	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
7	nsv1040484	chr11:32951066-33093204	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	nsv1046198	chr11:32954100-33075142	Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32947000-32957000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:32948400-32962000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr11:32948400-32963200	Strong transcription	HUES6 Cell Line	embryonic stem cell
4	chr11:32949600-32960200	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr11:32950200-32968000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr11:32950400-32962600	Strong transcription	HUES64 Cell Line	embryonic stem cell
7	chr11:32950400-32994400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr11:32950800-32959400	Strong transcription	Fetal Thymus	thymus
9	chr11:32950800-32960200	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr11:32951000-32958600	Strong transcription	HSMM	muscle
11	chr11:32951000-32960000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr11:32951000-32960200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr11:32951000-32960200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr11:32951000-32962200	Strong transcription	Dnd41	blood
15	chr11:32951200-32958600	Strong transcription	A549	lung
16	chr11:32951200-32958800	Strong transcription	Primary hematopoietic stem cells	blood
17	chr11:32951200-32962600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
18	chr11:32951400-32960600	Strong transcription	Hela-S3	cervix
19	chr11:32951600-32954600	Weak transcription	Stomach Mucosa	stomach
20	chr11:32951600-32954800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr11:32951600-32958400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr11:32951600-32963200	Strong transcription	H1 Cell Line	embryonic stem cell
23	chr11:32951800-32959200	Strong transcription	HUES48 Cell Line	embryonic stem cell
24	chr11:32951800-32959200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
25	chr11:32951800-32960600	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr11:32952000-32963200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr11:32952200-32957600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr11:32952200-32962600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
29	chr11:32952400-32968000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr11:32952600-32955200	Strong transcription	Primary T helper cells fromperipheralblood	blood
31	chr11:32952600-32961800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr11:32952800-32954800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr11:32952800-32955600	Strong transcription	Placenta Amnion	Placenta Amnion
34	chr11:32952800-32955800	Strong transcription	Ovary	ovary
35	chr11:32952800-32956000	Strong transcription	Primary T helper cells PMA-I stimulated	--
36	chr11:32952800-32956000	Strong transcription	Stomach Smooth Muscle	stomach
37	chr11:32952800-32956200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr11:32952800-32956800	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr11:32952800-32956800	Strong transcription	Fetal Muscle Leg	muscle
40	chr11:32952800-32956800	Strong transcription	Thymus	Thymus
41	chr11:32952800-32956800	Strong transcription	NHEK	skin
42	chr11:32952800-32957000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr11:32952800-32957000	Strong transcription	Duodenum Mucosa	Duodenum
44	chr11:32952800-32957000	Strong transcription	Fetal Intestine Large	intestine
45	chr11:32952800-32957200	Strong transcription	Duodenum Smooth Muscle	Duodenum
46	chr11:32952800-32957400	Strong transcription	Placenta	Placenta
47	chr11:32952800-32957600	Strong transcription	HepG2	liver
48	chr11:32952800-32957600	Strong transcription	Osteobl	bone
49	chr11:32952800-32958000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr11:32952800-32958000	Strong transcription	GM12878-XiMat	blood

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