Variant report

Variant	rs8031932
Chromosome Location	chr15:41779869-41779870
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:41773035..41782898-chr15:41783132..41789747,15	K562	blood:
2	chr15:41777253..41780203-chr15:41850412..41852434,2	K562	blood:
3	chr15:41768675..41771107-chr15:41779166..41782529,4	K562	blood:
4	chr15:41779821..41781548-chr15:41852797..41854697,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137815	Chromatin interaction
ENSG00000137825	Chromatin interaction
ENSG00000092445	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs316608	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35826725	0.87[GIH][hapmap]
rs57517228	0.82[EUR][1000 genomes]
rs57712847	0.82[EUR][1000 genomes]
rs7166469	0.85[GIH][hapmap];0.86[YRI][hapmap];0.82[EUR][1000 genomes]
rs8023925	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs8030350	1.00[CEU][hapmap]
rs8033095	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs8040021	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524476	chr15:41689232-41820200	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv904110	chr15:41776692-41813279	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv904111	chr15:41777898-41805115	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41769600-41780200	Weak transcription	Right Atrium	heart
2	chr15:41771600-41780200	Weak transcription	Fetal Heart	heart
3	chr15:41773400-41785000	Weak transcription	A549	lung
4	chr15:41773800-41780000	Weak transcription	HMEC	breast
5	chr15:41773800-41780200	Weak transcription	NHLF	lung
6	chr15:41773800-41784000	Weak transcription	HepG2	liver
7	chr15:41774000-41782200	Weak transcription	Osteobl	bone
8	chr15:41774800-41784600	Weak transcription	Dnd41	blood
9	chr15:41775000-41780400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr15:41775400-41780000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr15:41775400-41780000	Weak transcription	Esophagus	oesophagus
12	chr15:41775400-41780000	Weak transcription	Fetal Thymus	thymus
13	chr15:41775400-41780400	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr15:41775400-41784800	Weak transcription	Liver	Liver
15	chr15:41775600-41780000	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr15:41775600-41781800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr15:41775600-41781800	Weak transcription	NHDF-Ad	bronchial
18	chr15:41775600-41782200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr15:41775600-41783800	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr15:41775600-41784800	Weak transcription	Brain Angular Gyrus	brain
21	chr15:41775800-41780200	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr15:41775800-41782200	Weak transcription	HSMMtube	muscle
23	chr15:41776000-41780000	Weak transcription	Fetal Lung	lung
24	chr15:41776000-41780000	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr15:41776000-41780000	Weak transcription	HSMM	muscle
26	chr15:41776000-41781000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr15:41776000-41782000	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr15:41776000-41782200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr15:41776000-41782400	Weak transcription	NHEK	skin
30	chr15:41776000-41782800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr15:41776000-41784400	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr15:41776000-41784800	Weak transcription	Brain Germinal Matrix	brain
33	chr15:41776200-41782800	Weak transcription	Primary B cells from cord blood	blood
34	chr15:41776400-41780000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr15:41776400-41780000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr15:41776400-41783600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr15:41776400-41783800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr15:41776800-41780000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr15:41776800-41782400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr15:41776800-41784200	Weak transcription	K562	blood
41	chr15:41776800-41784600	Weak transcription	Placenta	Placenta
42	chr15:41777000-41780000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr15:41777200-41783000	Weak transcription	Fetal Brain Female	brain
44	chr15:41778400-41780600	Strong transcription	Fetal Stomach	stomach
45	chr15:41778600-41784800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr15:41778800-41780400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr15:41778800-41780400	Enhancers	Spleen	Spleen
48	chr15:41778800-41780600	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr15:41779000-41780400	Enhancers	Duodenum Mucosa	Duodenum
50	chr15:41779000-41780400	Genic enhancers	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links