Variant report

Variant	rs8032484
Chromosome Location	chr15:100271821-100271822
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12101486	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1574464	0.98[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72760585	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72760586	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72760587	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8033612	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8034156	0.81[AMR][1000 genomes]
rs8041078	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8041089	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036346	chr15:99752391-100365458	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv542520	chr15:99752391-100365458	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv817201	chr15:99839238-100537341	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv1038005	chr15:100170414-100633714	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
5	nsv542522	chr15:100170414-100633714	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
6	nsv904560	chr15:100196657-100339331	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
7	nsv904561	chr15:100204918-100486828	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
8	nsv428313	chr15:100236203-100757039	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
9	nsv904563	chr15:100239546-100274747	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
10	nsv570730	chr15:100240910-100700520	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
11	nsv1045838	chr15:100243067-101032218	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
12	nsv904564	chr15:100245296-100723798	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
13	nsv932678	chr15:100250311-101012358	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs8032484	LYSMD4	cis	Thyroid	GTEx
rs8032484	LYSMD4	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:100244600-100272400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr15:100249600-100272800	Weak transcription	Small Intestine	intestine
3	chr15:100249800-100272200	Weak transcription	HUVEC	blood vessel
4	chr15:100253600-100272400	Weak transcription	Stomach Mucosa	stomach
5	chr15:100258000-100272000	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr15:100259800-100272200	Weak transcription	Osteobl	bone
7	chr15:100261600-100272400	Weak transcription	Primary B cells from peripheral blood	blood
8	chr15:100261800-100272000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr15:100261800-100272000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr15:100261800-100272600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr15:100262000-100272200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr15:100262000-100272400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr15:100262200-100272400	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr15:100262800-100272400	Weak transcription	Primary B cells from cord blood	blood
15	chr15:100265400-100272000	Weak transcription	Hela-S3	cervix
16	chr15:100266200-100272200	Weak transcription	NH-A	brain
17	chr15:100266200-100272400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr15:100267600-100272400	Enhancers	Fetal Heart	heart
19	chr15:100268600-100272000	Weak transcription	Right Atrium	heart
20	chr15:100269200-100272400	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr15:100269600-100272000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr15:100269600-100272000	Weak transcription	Brain Germinal Matrix	brain
23	chr15:100269600-100272000	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr15:100269600-100272000	Enhancers	Fetal Lung	lung
25	chr15:100269600-100272200	Weak transcription	Brain Substantia Nigra	brain
26	chr15:100269600-100272200	Weak transcription	HSMMtube	muscle
27	chr15:100269600-100272400	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr15:100269600-100272600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr15:100269800-100272000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr15:100269800-100272000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr15:100269800-100272000	Weak transcription	Psoas Muscle	Psoas
32	chr15:100269800-100272000	Weak transcription	Thymus	Thymus
33	chr15:100269800-100272200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr15:100269800-100272200	Weak transcription	Brain Angular Gyrus	brain
35	chr15:100269800-100272200	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr15:100269800-100272400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr15:100269800-100272400	Weak transcription	Aorta	Aorta
38	chr15:100269800-100272400	Weak transcription	Esophagus	oesophagus
39	chr15:100269800-100272400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr15:100269800-100272600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr15:100269800-100272800	Weak transcription	Gastric	stomach
42	chr15:100270000-100272000	Weak transcription	Colon Smooth Muscle	Colon
43	chr15:100270000-100272200	Weak transcription	Primary T helper cells fromperipheralblood	blood
44	chr15:100270000-100272400	Weak transcription	Primary T cells from cord blood	blood
45	chr15:100270000-100272400	Enhancers	HepG2	liver
46	chr15:100270200-100272200	Enhancers	Fetal Kidney	kidney
47	chr15:100270200-100272400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr15:100270400-100272200	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr15:100270400-100272400	Weak transcription	Pancreas	Pancrea
50	chr15:100270600-100272400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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