Variant report

Variant	rs8033665
Chromosome Location	chr15:78133367-78133368
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:78133236..78134995-chr15:78137476..78140280,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10152457	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11072679	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12148634	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12911986	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4243052	0.81[EUR][1000 genomes]
rs4243057	0.85[ASN][1000 genomes]
rs4243058	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4445861	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4465577	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4886528	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4886927	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4886928	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4886931	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4886934	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7163029	0.86[EUR][1000 genomes]
rs7173202	0.95[AFR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7174757	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7182805	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8032504	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv1806097	chr15:77817889-78301377	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
4	nsv833062	chr15:78035206-78220358	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv904424	chr15:78059488-78158893	Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv904425	chr15:78064664-78153850	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv1833316	chr15:78081307-78328108	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
8	nsv904426	chr15:78090630-78264164	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv904427	chr15:78129964-78251431	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78131800-78134200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:78132400-78133400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr15:78132400-78134200	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr15:78132400-78134800	Enhancers	Fetal Intestine Small	intestine
5	chr15:78132600-78133600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:78132600-78134000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr15:78132600-78134000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr15:78132600-78134200	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr15:78132800-78133400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chr15:78132800-78133600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr15:78132800-78134600	Enhancers	Fetal Intestine Large	intestine
12	chr15:78133000-78133400	Bivalent Enhancer	NHEK	skin
13	chr15:78133000-78133600	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr15:78133000-78134200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr15:78133200-78133400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
16	chr15:78133200-78133600	Enhancers	H9 Cell Line	embryonic stem cell
17	chr15:78133200-78134000	Enhancers	H1 Cell Line	embryonic stem cell
18	chr15:78133200-78134000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr15:78133200-78134000	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr15:78133200-78134000	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr15:78133200-78134000	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr15:78133200-78134200	Bivalent Enhancer	A549	lung
23	chr15:78133200-78134200	Flanking Active TSS	Hela-S3	cervix
24	chr15:78133200-78134200	Enhancers	HMEC	breast
25	chr15:78133200-78134200	Bivalent Enhancer	Osteobl	bone
26	chr15:78133200-78134400	Enhancers	NH-A	brain
27	chr15:78133200-78134600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr15:78133200-78134600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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