Variant report

Variant	rs8033798
Chromosome Location	chr15:44301291-44301292
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10467976	0.82[YRI][hapmap]
rs12324129	1.00[AMR][1000 genomes]
rs12324372	1.00[AMR][1000 genomes]
rs2615264	1.00[AMR][1000 genomes]
rs9302114	0.82[YRI][hapmap]
rs9806360	0.82[YRI][hapmap]
rs9972380	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037786	chr15:43888926-44318587	Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv542370	chr15:43888926-44318587	Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv431387	chr15:43929378-44862930	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
4	nsv931051	chr15:43988761-44833518	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	154 gene(s)	inside rSNPs	diseases
5	nsv1044435	chr15:44176103-44507403	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
6	nsv1052511	chr15:44266441-44719023	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
7	nsv542371	chr15:44266441-44719023	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
8	nsv1045362	chr15:44280481-44414443	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:44288600-44301600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:44291400-44301400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr15:44292600-44303000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr15:44293000-44301400	Weak transcription	NH-A	brain
5	chr15:44295600-44302800	Weak transcription	Brain Hippocampus Middle	brain
6	chr15:44295800-44303400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr15:44295800-44303600	Weak transcription	Brain Substantia Nigra	brain
8	chr15:44297200-44301400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr15:44299200-44303400	Weak transcription	Brain Angular Gyrus	brain
10	chr15:44300400-44302600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr15:44300600-44302600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr15:44300800-44302400	Enhancers	NHDF-Ad	bronchial
13	chr15:44300800-44302600	Enhancers	HMEC	breast
14	chr15:44300800-44302600	Enhancers	NHEK	skin
15	chr15:44300800-44302800	Enhancers	Osteobl	bone
16	chr15:44300800-44303400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr15:44301000-44301400	Flanking Active TSS	Hela-S3	cervix
18	chr15:44301000-44302400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr15:44301000-44302600	Enhancers	Muscle Satellite Cultured Cells	--
20	chr15:44301200-44301800	Enhancers	HUVEC	blood vessel
21	chr15:44301200-44302200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr15:44301200-44302400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr15:44301200-44302600	Enhancers	NHLF	lung

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