Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1166718	0.83[ASN][1000 genomes]
rs1166722	0.82[ASN][1000 genomes]
rs1166723	0.87[CHB][hapmap];0.83[CHD][hapmap];0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs12592687	0.89[ASN][1000 genomes]
rs2576929	0.81[ASN][1000 genomes]
rs2576932	0.91[CHB][hapmap];0.85[CHD][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs2576933	0.91[CHB][hapmap];0.85[CHD][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs2631714	0.87[CHB][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs2638009	0.87[CHB][hapmap];0.82[JPT][hapmap]
rs4115216	0.91[CHB][hapmap];0.90[ASN][1000 genomes]
rs4924389	0.87[CHB][hapmap];0.82[CHD][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs594863	0.95[JPT][hapmap]
rs606927	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs620407	0.95[JPT][hapmap]
rs6492913	0.91[MKK][hapmap]
rs6492914	0.91[CHB][hapmap];0.84[CHD][hapmap];0.87[ASN][1000 genomes]
rs6492915	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6492919	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs670748	0.86[ASN][1000 genomes]
rs7165244	1.00[JPT][hapmap];0.83[MEX][hapmap];0.81[ASN][1000 genomes]
rs7179417	0.90[CHB][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs8031241	0.91[CHB][hapmap];0.87[CHD][hapmap];0.89[ASN][1000 genomes]
rs8033485	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3373125	chr15:39691567-40061262	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv832978	chr15:39899759-40094881	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Obesity-related traits	23251661	GWAS catalog

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40029200-40040200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr15:40029600-40038600	Weak transcription	NHDF-Ad	bronchial
3	chr15:40033600-40040200	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr15:40034800-40038600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr15:40035000-40040400	Weak transcription	Adipose Nuclei	Adipose
6	chr15:40035600-40050000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr15:40036200-40039000	Weak transcription	A549	lung
8	chr15:40037000-40039600	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr15:40037800-40038800	Enhancers	Placenta	Placenta
10	chr15:40037800-40041400	Enhancers	Hela-S3	cervix
11	chr15:40038000-40039400	Weak transcription	HMEC	breast
12	chr15:40038000-40040400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr15:40038200-40039400	Weak transcription	NHEK	skin
14	chr15:40038200-40039600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr15:40038400-40039600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr15:40038400-40040800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr15:40038400-40041200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr15:40038400-40041200	Enhancers	Osteobl	bone

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