Variant report

Variant	rs8033990
Chromosome Location	chr15:41186877-41186878
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:41186236..41188043-chr15:41197568..41199237,2	MCF-7	breast:
2	chr15:41186714..41189408-chr15:41192146..41195371,4	MCF-7	breast:
3	chr15:41045121..41047501-chr15:41186359..41188842,2	K562	blood:
4	chr15:41044630..41047663-chr15:41185217..41189065,4	K562	blood:
5	chr15:41098099..41100613-chr15:41185742..41188181,3	K562	blood:
6	chr15:41165629..41167892-chr15:41184991..41187244,2	K562	blood:
7	chr15:41046423..41049572-chr15:41185616..41187810,3	MCF-7	breast:
8	chr15:41147027..41152625-chr15:41184304..41188925,8	K562	blood:
9	chr1:212781499..212782082-chr15:41186243..41186983,2	Hela-S3	cervix:
10	chr15:41098203..41099826-chr15:41186017..41187981,2	K562	blood:
11	chr15:41135697..41137573-chr15:41186789..41189457,2	MCF-7	breast:
12	chr15:41186769..41187590-chr6:26216814..26217742,2	Hela-S3	cervix:
13	chr15:41135103..41140677-chr15:41182913..41189081,12	MCF-7	breast:
14	chr15:41185065..41188307-chr15:41217955..41221717,3	MCF-7	breast:
15	chr15:40990437..40992433-chr15:41186523..41189273,2	K562	blood:
16	chr15:40985078..40988247-chr15:41185737..41188201,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000162772	Chromatin interaction
ENSG00000264256	Chromatin interaction
ENSG00000166145	Chromatin interaction
ENSG00000104129	Chromatin interaction
ENSG00000051180	Chromatin interaction
ENSG00000168274	Chromatin interaction
ENSG00000245849	Chromatin interaction
ENSG00000187990	Chromatin interaction
ENSG00000128917	Chromatin interaction
ENSG00000166140	Chromatin interaction
ENSG00000104140	Chromatin interaction
ENSG00000261183	Chromatin interaction
ENSG00000137824	Chromatin interaction
ENSG00000251161	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs28436138	0.88[AFR][1000 genomes]
rs55851751	0.91[AFR][1000 genomes]
rs59096643	0.91[AFR][1000 genomes]
rs61336574	0.91[AFR][1000 genomes]
rs8030883	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904101	chr15:40979651-41275014	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	esv1819092	chr15:41017682-41255750	Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
3	nsv904102	chr15:41046883-41201699	Strong transcription Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv1054764	chr15:41068625-41196410	Active TSS Strong transcription Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv569228	chr15:41106485-41194151	Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
6	nsv904103	chr15:41123172-41275014	Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
7	nsv904104	chr15:41149824-41234932	Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
8	nsv904105	chr15:41149824-41275014	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
9	esv1819792	chr15:41184722-41234825	Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41185800-41187400	Active TSS	Brain Germinal Matrix	brain
2	chr15:41185800-41187600	Active TSS	HSMM	muscle
3	chr15:41186000-41187000	Active TSS	Thymus	Thymus
4	chr15:41186000-41187200	Active TSS	Right Atrium	heart
5	chr15:41186000-41187400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr15:41186000-41187400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr15:41186000-41187400	Active TSS	Aorta	Aorta
8	chr15:41186000-41187400	Active TSS	Placenta Amnion	Placenta Amnion
9	chr15:41186000-41187400	Active TSS	Psoas Muscle	Psoas
10	chr15:41186000-41187600	Active TSS	iPS-15b Cell Line	embryonic stem cell
11	chr15:41186000-41187600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr15:41186000-41187600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr15:41186000-41187600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr15:41186000-41187600	Active TSS	Duodenum Smooth Muscle	Duodenum
15	chr15:41186000-41187600	Active TSS	Pancreatic Islets	Pancreatic Islet
16	chr15:41186000-41187800	Active TSS	iPS-20b Cell Line	embryonic stem cell
17	chr15:41186000-41187800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr15:41186000-41187800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
19	chr15:41186000-41187800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr15:41186000-41187800	Active TSS	NHDF-Ad	bronchial
21	chr15:41186000-41188000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr15:41186000-41188000	Active TSS	H9 Cell Line	embryonic stem cell
23	chr15:41186000-41188000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr15:41186000-41188000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr15:41186000-41188000	Flanking Active TSS	Primary B cells from cord blood	blood
26	chr15:41186200-41187200	Active TSS	Primary T cells from cord blood	blood
27	chr15:41186200-41187200	Active TSS	Liver	Liver
28	chr15:41186200-41187200	Active TSS	Brain Angular Gyrus	brain
29	chr15:41186200-41187200	Active TSS	Brain Cingulate Gyrus	brain
30	chr15:41186200-41187200	Active TSS	Brain Substantia Nigra	brain
31	chr15:41186200-41187400	Active TSS	Breast Myoepithelial Primary Cells	Breast
32	chr15:41186200-41187400	Active TSS	Brain Hippocampus Middle	brain
33	chr15:41186200-41187400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
34	chr15:41186200-41187400	Active TSS	Fetal Lung	lung
35	chr15:41186200-41187400	Active TSS	Left Ventricle	heart
36	chr15:41186200-41187400	Active TSS	Rectal Smooth Muscle	rectum
37	chr15:41186200-41187400	Active TSS	K562	blood
38	chr15:41186200-41187600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
39	chr15:41186200-41187600	Active TSS	H1 Cell Line	embryonic stem cell
40	chr15:41186200-41187600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr15:41186200-41187600	Active TSS	HUES6 Cell Line	embryonic stem cell
42	chr15:41186200-41187600	Active TSS	iPS-18 Cell Line	embryonic stem cell
43	chr15:41186200-41187600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
44	chr15:41186200-41187600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr15:41186200-41187600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr15:41186200-41187600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr15:41186200-41187600	Active TSS	Brain Anterior Caudate	brain
48	chr15:41186200-41187600	Active TSS	Fetal Heart	heart
49	chr15:41186200-41187600	Active TSS	Fetal Kidney	kidney
50	chr15:41186200-41187600	Active TSS	Gastric	stomach

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