Variant report

Variant	rs8034354
Chromosome Location	chr15:78696653-78696654
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11630879	0.94[EUR][1000 genomes]
rs11635031	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11635084	0.93[EUR][1000 genomes]
rs11635330	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
3	nsv833063	chr15:78605215-78754945	Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1052910	chr15:78608637-78707049	Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1627	chr15:78683761-78728604	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78667600-78704400	Weak transcription	Lung	lung
2	chr15:78688000-78703800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr15:78691800-78697400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr15:78692400-78697600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr15:78692400-78697600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr15:78692400-78705200	Weak transcription	Spleen	Spleen
7	chr15:78694000-78696800	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr15:78694000-78696800	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr15:78694000-78697000	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr15:78694000-78697400	Weak transcription	Right Atrium	heart
11	chr15:78696200-78699000	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr15:78696400-78697400	Weak transcription	Fetal Intestine Large	intestine
13	chr15:78696400-78698000	Weak transcription	Duodenum Mucosa	Duodenum
14	chr15:78696400-78698200	Weak transcription	Rectal Mucosa Donor 31	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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