Variant report

Variant	rs8034899
Chromosome Location	chr15:53730764-53730765
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:53730512..53732111-chr15:53733346..53734868,2	MCF-7	breast:
2	chr15:53623501..53624759-chr15:53729879..53730882,11	MCF-7	breast:
3	chr15:53623501..53624538-chr15:53729891..53730882,6	MCF-7	breast:
4	chr15:53676613..53677768-chr15:53730185..53730843,4	MCF-7	breast:
5	chr15:53704517..53705079-chr15:53729947..53730858,2	MCF-7	breast:
6	chr15:53729402..53730935-chr15:53762168..53764681,2	MCF-7	breast:
7	chr15:53729933..53730858-chr15:53774459..53775291,2	MCF-7	breast:
8	chr15:53689916..53690914-chr15:53729839..53730806,3	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1516404	0.88[AFR][1000 genomes]
rs1516405	0.88[AFR][1000 genomes]
rs2917621	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs621694	0.81[ASN][1000 genomes]
rs7177828	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8027064	0.81[ASN][1000 genomes]
rs8027790	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8032413	0.88[AFR][1000 genomes]
rs8035203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833008	chr15:53630471-53780618	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv904223	chr15:53665247-54340070	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv904224	chr15:53668018-54210677	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1049319	chr15:53671945-53785267	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1050374	chr15:53674726-53785267	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv1052235	chr15:53677524-54618723	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv542388	chr15:53677524-54618723	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:53724600-53732000	Enhancers	HepG2	liver
2	chr15:53726600-53732200	Enhancers	Liver	Liver
3	chr15:53728600-53731200	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr15:53729200-53739600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr15:53729800-53731000	Enhancers	Brain Hippocampus Middle	brain
6	chr15:53730400-53730800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr15:53730400-53730800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr15:53730600-53730800	Enhancers	Brain Germinal Matrix	brain
9	chr15:53730600-53731000	Enhancers	Brain Substantia Nigra	brain
10	chr15:53730600-53731000	Enhancers	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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