Variant report

Variant	rs8035125
Chromosome Location	chr15:34276169-34276170
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11856529	0.99[ASN][1000 genomes]
rs12438655	0.93[ASN][1000 genomes]
rs12438680	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12438682	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs16954030	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2078562	0.91[CEU][hapmap]
rs2632075	0.93[TSI][hapmap]
rs2632079	0.93[EUR][1000 genomes]
rs2632107	0.95[EUR][1000 genomes]
rs2684931	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs2684932	0.93[TSI][hapmap]
rs2684953	0.87[TSI][hapmap];0.82[EUR][1000 genomes]
rs2684956	0.95[EUR][1000 genomes]
rs2684958	0.83[EUR][1000 genomes]
rs2702284	1.00[CEU][hapmap];0.97[TSI][hapmap];0.95[EUR][1000 genomes]
rs2702285	1.00[CEU][hapmap];0.97[TSI][hapmap];0.95[EUR][1000 genomes]
rs28471985	0.95[EUR][1000 genomes]
rs489832	0.91[CHB][hapmap];0.93[CHD][hapmap];0.86[ASN][1000 genomes]
rs511422	0.86[CHB][hapmap];0.88[CHD][hapmap]
rs525591	0.95[EUR][1000 genomes]
rs563663	0.86[CHB][hapmap]
rs569035	0.86[CHB][hapmap];0.80[ASN][1000 genomes]
rs56965184	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs61611317	0.95[EUR][1000 genomes]
rs6495419	0.94[ASW][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.94[MEX][hapmap];0.99[MKK][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6495421	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs6495422	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs6495423	0.90[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs6495424	0.90[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs6495425	0.99[ASN][1000 genomes]
rs6495426	0.99[ASN][1000 genomes]
rs6495448	1.00[CEU][hapmap];0.83[MEX][hapmap];0.97[TSI][hapmap];0.95[EUR][1000 genomes]
rs6495459	1.00[CEU][hapmap];0.83[MEX][hapmap];0.97[TSI][hapmap];0.95[EUR][1000 genomes]
rs7177293	0.97[EUR][1000 genomes]
rs8024385	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs8035294	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8038713	0.94[ASW][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.85[YRI][hapmap];0.90[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs8039574	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8039609	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9806210	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv456789	chr15:34034421-34426618	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv568920	chr15:34034421-34426618	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv471235	chr15:34035529-34421951	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv1044844	chr15:34065524-34296829	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv456790	chr15:34264018-34281733	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv568923	chr15:34264018-34281733	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv976863	chr15:34274708-34276555	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
9	esv2761666	chr15:34275262-34279231	Weak transcription Enhancers Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
10	nsv516347	chr15:34276169-34277907	Enhancers Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
11	nsv456791	chr15:34276169-34277907	Enhancers Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
12	nsv456792	chr15:34276169-34277907	Flanking Active TSS Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
13	nsv568924	chr15:34276169-34277907	Flanking Active TSS Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34236800-34277200	Weak transcription	Left Ventricle	heart
2	chr15:34238000-34282400	Weak transcription	Ovary	ovary
3	chr15:34261200-34277200	Weak transcription	Brain Anterior Caudate	brain
4	chr15:34263800-34277200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr15:34264400-34277000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr15:34264800-34281200	Weak transcription	GM12878-XiMat	blood
7	chr15:34265200-34299600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr15:34265400-34294200	Weak transcription	Fetal Stomach	stomach
9	chr15:34265400-34311800	Weak transcription	Liver	Liver
10	chr15:34270000-34276800	Weak transcription	Brain Cingulate Gyrus	brain
11	chr15:34270200-34277400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr15:34271600-34277200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr15:34271600-34277400	Weak transcription	Pancreas	Pancrea
14	chr15:34273000-34277600	Weak transcription	NHEK	skin
15	chr15:34274000-34277000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr15:34274000-34277200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr15:34274000-34277400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr15:34274000-34277400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr15:34274200-34277400	Weak transcription	NHLF	lung
20	chr15:34274400-34311000	Weak transcription	Primary B cells from cord blood	blood
21	chr15:34274600-34276800	Weak transcription	Placenta	Placenta
22	chr15:34275200-34277000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr15:34275400-34293200	Weak transcription	Primary T cells from cord blood	blood
24	chr15:34275600-34276200	Enhancers	Brain Angular Gyrus	brain
25	chr15:34275600-34276400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr15:34275800-34276400	Enhancers	Brain Substantia Nigra	brain
27	chr15:34276000-34277000	Weak transcription	Aorta	Aorta

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