Variant report

Variant	rs8035474
Chromosome Location	chr15:57022710-57022711
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:56993897..56995437-chr15:57022399..57024475,2	K562	blood:
2	chr15:57022349..57024643-chr15:57034116..57035934,2	K562	blood:
3	chr15:57021470..57024723-chr15:57024853..57027079,3	K562	blood:

Variant related genes	Relation type
ENSG00000137871	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7171500	0.91[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv569576	chr15:57012816-57126917	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs8035474	ALDH1A2	cis	parietal	SCAN

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56971000-57023400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:56993000-57024000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr15:56994000-57023800	Weak transcription	Fetal Kidney	kidney
4	chr15:56997200-57022800	Weak transcription	Gastric	stomach
5	chr15:56997200-57023800	Weak transcription	Fetal Stomach	stomach
6	chr15:56998800-57023400	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr15:56998800-57023800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr15:56999400-57023400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr15:57009400-57022800	Weak transcription	Right Atrium	heart
10	chr15:57009400-57024400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr15:57011600-57023400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr15:57011600-57024400	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr15:57011600-57024400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr15:57011800-57024000	Weak transcription	Aorta	Aorta
15	chr15:57012400-57025000	Weak transcription	Spleen	Spleen
16	chr15:57012600-57023000	Weak transcription	NHLF	lung
17	chr15:57012600-57023400	Weak transcription	Psoas Muscle	Psoas
18	chr15:57013000-57022800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr15:57013400-57024200	Weak transcription	Ovary	ovary
20	chr15:57014200-57022800	Weak transcription	K562	blood
21	chr15:57016800-57023400	Weak transcription	Fetal Muscle Trunk	muscle
22	chr15:57017400-57022800	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr15:57017400-57022800	Weak transcription	Small Intestine	intestine
24	chr15:57017400-57023000	Weak transcription	Fetal Intestine Large	intestine
25	chr15:57017400-57023400	Weak transcription	Pancreas	Pancrea
26	chr15:57018400-57022800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr15:57018600-57023000	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr15:57019000-57022800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr15:57019200-57022800	Strong transcription	A549	lung
30	chr15:57019200-57023800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr15:57019800-57023000	Enhancers	Brain Angular Gyrus	brain
32	chr15:57020600-57023400	Weak transcription	Left Ventricle	heart
33	chr15:57020800-57023400	Enhancers	Primary T cells from cord blood	blood
34	chr15:57020800-57023800	Enhancers	Colon Smooth Muscle	Colon
35	chr15:57020800-57024400	Enhancers	Primary T helper cells PMA-I stimulated	--
36	chr15:57021000-57022800	Enhancers	Brain Inferior Temporal Lobe	brain
37	chr15:57021200-57022800	Active TSS	Fetal Thymus	thymus
38	chr15:57021200-57023200	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
39	chr15:57021200-57024000	Enhancers	Primary neutrophils fromperipheralblood	blood
40	chr15:57021200-57024000	Enhancers	Brain Substantia Nigra	brain
41	chr15:57021200-57024200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
42	chr15:57021400-57022800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr15:57021400-57022800	Enhancers	Skeletal Muscle Male	skeletal muscle
44	chr15:57021400-57023000	Enhancers	Primary hematopoietic stem cells	blood
45	chr15:57021400-57023800	Enhancers	Primary T helper cells fromperipheralblood	blood
46	chr15:57021400-57024200	Enhancers	Adipose Nuclei	Adipose
47	chr15:57021400-57024200	Enhancers	Brain Hippocampus Middle	brain
48	chr15:57021600-57023000	Enhancers	HSMMtube	muscle
49	chr15:57021800-57023800	Enhancers	Rectal Smooth Muscle	rectum
50	chr15:57021800-57023800	Enhancers	NHDF-Ad	bronchial

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