Variant report

Variant	rs8035636
Chromosome Location	chr15:31675910-31675911
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:31674203..31677155-chr15:31682860..31685276,2	K562	blood:
2	chr15:31668360..31671793-chr15:31672746..31676578,5	K562	blood:
3	chr15:31668360..31671793-chr15:31673834..31676578,3	K562	blood:
4	chr15:31673644..31676164-chr15:31678034..31680929,2	K562	blood:

Variant related genes	Relation type
ENSG00000169926	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs34056696	1.00[EUR][1000 genomes]
rs34331965	0.84[EUR][1000 genomes]
rs34682798	1.00[EUR][1000 genomes]
rs35799005	1.00[EUR][1000 genomes]
rs71474659	1.00[EUR][1000 genomes]
rs71474660	0.96[EUR][1000 genomes]
rs7172678	0.96[EUR][1000 genomes]
rs753636	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv903831	chr15:30986051-31723279	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv1054147	chr15:31014507-31972706	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv542306	chr15:31014507-31972706	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	nsv932896	chr15:31292475-31730445	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
5	esv1815415	chr15:31483843-31697213	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
6	esv34100	chr15:31496514-31792591	Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
7	nsv903840	chr15:31589970-31800149	Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
8	nsv903841	chr15:31616674-31697242	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
9	nsv903842	chr15:31621321-31697242	Weak transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
10	nsv456748	chr15:31621321-31697642	Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
11	nsv568801	chr15:31621321-31697642	Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
12	esv1810782	chr15:31633161-31697642	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
13	nsv903843	chr15:31672947-31723279	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:31664800-31679800	Weak transcription	Hela-S3	cervix
2	chr15:31665400-31680000	Weak transcription	Ovary	ovary
3	chr15:31665800-31680000	Weak transcription	Fetal Lung	lung
4	chr15:31666000-31679400	Weak transcription	Stomach Mucosa	stomach
5	chr15:31668400-31677200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr15:31669000-31679800	Weak transcription	GM12878-XiMat	blood
7	chr15:31670800-31676400	Weak transcription	HMEC	breast
8	chr15:31670800-31683800	Weak transcription	Small Intestine	intestine
9	chr15:31671800-31677000	Weak transcription	HSMM	muscle
10	chr15:31672000-31676800	Weak transcription	NHDF-Ad	bronchial
11	chr15:31672200-31680000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr15:31672400-31679800	Weak transcription	Fetal Brain Male	brain
13	chr15:31672800-31676800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr15:31672800-31679800	Weak transcription	Brain Angular Gyrus	brain
15	chr15:31673000-31676400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr15:31673000-31676600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr15:31673000-31679200	Weak transcription	Osteobl	bone
18	chr15:31673000-31680000	Weak transcription	Colon Smooth Muscle	Colon
19	chr15:31673200-31676200	Weak transcription	NHEK	skin
20	chr15:31673200-31679400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr15:31673200-31679800	Weak transcription	Rectal Smooth Muscle	rectum
22	chr15:31673200-31680000	Weak transcription	Primary hematopoietic stem cells	blood
23	chr15:31673600-31679400	Weak transcription	NH-A	brain
24	chr15:31673600-31679800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr15:31673600-31684000	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr15:31673800-31676800	Weak transcription	Esophagus	oesophagus
27	chr15:31673800-31677000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr15:31673800-31677200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr15:31673800-31677600	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr15:31673800-31679800	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr15:31673800-31679800	Weak transcription	Brain Substantia Nigra	brain
32	chr15:31673800-31680000	Weak transcription	Brain Anterior Caudate	brain
33	chr15:31674000-31676600	Enhancers	Fetal Intestine Large	intestine
34	chr15:31674200-31679400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr15:31674200-31679800	Weak transcription	Brain Cingulate Gyrus	brain
36	chr15:31674200-31679800	Weak transcription	NHLF	lung
37	chr15:31674200-31680000	Weak transcription	Brain Hippocampus Middle	brain
38	chr15:31674200-31684000	Weak transcription	Colonic Mucosa	Colon
39	chr15:31674400-31676800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr15:31674400-31676800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr15:31674400-31677800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr15:31674400-31679000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr15:31674400-31679200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr15:31674400-31679400	Weak transcription	Monocytes-CD14+_RO01746	blood
45	chr15:31674400-31680000	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr15:31674600-31677000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr15:31674600-31677000	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr15:31674600-31677400	Weak transcription	Primary neutrophils fromperipheralblood	blood
49	chr15:31674600-31679400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr15:31674600-31679800	Weak transcription	Primary monocytes fromperipheralblood	blood

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