Variant report

Variant	rs8035652
Chromosome Location	chr15:50345393-50345394
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:49918504..49920160-chr15:50344164..50346378,2	MCF-7	breast:
2	chr15:50166426..50168186-chr15:50342851..50345400,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11070743	0.91[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs12437905	1.00[CEU][hapmap];0.90[CHB][hapmap];0.87[JPT][hapmap];0.91[EUR][1000 genomes]
rs2414003	0.81[CHB][hapmap]
rs4522364	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv1035983	chr15:50223334-50595170	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv542382	chr15:50223334-50595170	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv904207	chr15:50290295-50352945	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1530	chr15:50302524-50347616	Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv569395	chr15:50345393-50437494	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50337400-50347400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr15:50339400-50347200	Weak transcription	Aorta	Aorta
3	chr15:50341200-50347000	Weak transcription	Right Atrium	heart
4	chr15:50341400-50346200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr15:50341600-50347000	Enhancers	NHDF-Ad	bronchial
6	chr15:50341600-50347200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr15:50342400-50347400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr15:50343000-50351200	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr15:50343200-50347000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr15:50343200-50347000	Enhancers	Osteobl	bone
11	chr15:50343400-50346000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr15:50343400-50352000	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr15:50343400-50352400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr15:50343600-50348600	Enhancers	Fetal Intestine Large	intestine
15	chr15:50343800-50345400	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr15:50343800-50346200	Enhancers	Fetal Intestine Small	intestine
17	chr15:50344200-50345800	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr15:50344200-50346000	Enhancers	Primary hematopoietic stem cells	blood
19	chr15:50344200-50347000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr15:50344200-50356600	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr15:50344400-50345800	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr15:50344600-50345400	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr15:50344600-50345600	Weak transcription	Adipose Nuclei	Adipose
24	chr15:50344600-50345800	Enhancers	Sigmoid Colon	Sigmoid Colon
25	chr15:50344600-50346600	Weak transcription	Fetal Lung	lung
26	chr15:50344600-50347200	Weak transcription	Brain Hippocampus Middle	brain
27	chr15:50344600-50347400	Weak transcription	Colon Smooth Muscle	Colon
28	chr15:50344600-50347400	Weak transcription	Fetal Stomach	stomach
29	chr15:50344600-50347800	Weak transcription	Brain Substantia Nigra	brain
30	chr15:50344600-50349800	Weak transcription	Brain Angular Gyrus	brain
31	chr15:50344600-50349800	Weak transcription	Brain Cingulate Gyrus	brain
32	chr15:50344600-50351400	Weak transcription	Small Intestine	intestine
33	chr15:50344800-50345600	Weak transcription	Hela-S3	cervix
34	chr15:50344800-50346400	Weak transcription	NHLF	lung
35	chr15:50344800-50347000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr15:50344800-50347000	Weak transcription	Rectal Smooth Muscle	rectum
37	chr15:50344800-50347000	Weak transcription	HSMM	muscle
38	chr15:50344800-50350000	Weak transcription	A549	lung
39	chr15:50345000-50346000	Enhancers	Primary B cells from cord blood	blood
40	chr15:50345200-50345800	Enhancers	Stomach Smooth Muscle	stomach
41	chr15:50345200-50348000	Enhancers	Duodenum Mucosa	Duodenum

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