Variant report

Variant	rs8036499
Chromosome Location	chr15:62123600-62123601
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr15:62123075-62124091	ECC-1	luminal epithelium:	n/a	chr15:62123514-62123528
2	CEBPB	chr15:62123191-62123994	ECC-1	luminal epithelium:	n/a	n/a
3	CEBPB	chr15:62123592-62124024	ECC-1	luminal epithelium:	n/a	n/a
4	POLR2A	chr15:62123049-62123997	HL-60	blood:	n/a	n/a
5	POLR2A	chr15:62123106-62124029	HL-60	blood:	n/a	n/a
6	TCF12	chr15:62123184-62124215	ECC-1	luminal epithelium:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:62114335..62116359-chr15:62122402..62125286,2	K562	blood:

Variant related genes	Relation type
ENSG00000259564	TF binding region

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12591667	0.88[YRI][hapmap]
rs12595158	0.87[YRI][hapmap]
rs1559673	1.00[YRI][hapmap]
rs16944656	1.00[AMR][1000 genomes]
rs16944661	1.00[ASW][hapmap];1.00[AMR][1000 genomes]
rs17238127	0.88[YRI][hapmap]
rs17303866	1.00[YRI][hapmap]
rs17303873	0.88[YRI][hapmap]
rs4775446	0.88[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904284	chr15:62123600-62243197	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:62121800-62126600	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr15:62122400-62124200	Enhancers	Primary hematopoietic stem cells	blood
3	chr15:62122600-62123800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr15:62122600-62124200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr15:62122800-62123600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr15:62123000-62124000	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr15:62123000-62124000	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr15:62123000-62124200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr15:62123000-62124200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr15:62123000-62124400	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr15:62123200-62123600	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr15:62123200-62124000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
13	chr15:62123400-62123600	Active TSS	iPS-15b Cell Line	embryonic stem cell
14	chr15:62123400-62123800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr15:62123400-62124000	Enhancers	H1 Cell Line	embryonic stem cell
16	chr15:62123400-62124200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr15:62123400-62124200	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr15:62123400-62124200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
19	chr15:62123400-62124400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr15:62123400-62124600	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr15:62123400-62126400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr15:62123600-62123800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
23	chr15:62123600-62123800	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr15:62123600-62124000	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr15:62123600-62124200	Enhancers	HUES48 Cell Line	embryonic stem cell
26	chr15:62123600-62124200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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