Variant report

Variant	rs8036767
Chromosome Location	chr15:83234210-83234211
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:83226594..83229969-chr15:83232358..83234992,5	K562	blood:
2	chr15:83226594..83230690-chr15:83232358..83235260,6	K562	blood:
3	chr15:83233945..83235595-chr15:83736586..83738485,2	K562	blood:
4	chr15:83233152..83235673-chr15:83264929..83267672,2	MCF-7	breast:
5	chr15:83223012..83224656-chr15:83233813..83235833,2	K562	blood:
6	chr15:83233938..83235753-chr15:83244078..83245839,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11635044	0.87[YRI][hapmap]
rs11852808	0.87[YRI][hapmap]
rs8028683	0.87[YRI][hapmap]
rs8036854	0.85[YRI][hapmap]
rs8037175	1.00[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427965	chr15:82741381-83310525	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	nsv428309	chr15:82741381-83310525	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	esv2758391	chr15:82879646-83310525	Bivalent Enhancer Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
4	esv2760046	chr15:82879646-83310525	Strong transcription Enhancers Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv1035899	chr15:83108446-83315731	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv833071	chr15:83123646-83310510	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83216800-83235000	Weak transcription	NHLF	lung
2	chr15:83219000-83239400	Weak transcription	Colon Smooth Muscle	Colon
3	chr15:83219800-83239800	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr15:83222000-83235200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr15:83222000-83239200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr15:83222200-83237800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr15:83222600-83239400	Weak transcription	Fetal Stomach	stomach
8	chr15:83222600-83239600	Weak transcription	Ovary	ovary
9	chr15:83222600-83239600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr15:83222800-83240600	Weak transcription	Aorta	Aorta
11	chr15:83223800-83239600	Weak transcription	Brain Substantia Nigra	brain
12	chr15:83224800-83235400	Weak transcription	Stomach Smooth Muscle	stomach
13	chr15:83224800-83239800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr15:83230400-83235200	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr15:83232000-83235600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr15:83232200-83239400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr15:83232600-83239600	Weak transcription	Fetal Lung	lung
18	chr15:83233400-83234400	Strong transcription	Brain Inferior Temporal Lobe	brain
19	chr15:83233400-83235200	Strong transcription	K562	blood
20	chr15:83233600-83234600	Strong transcription	Brain Angular Gyrus	brain
21	chr15:83233600-83234800	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr15:83233800-83234400	Strong transcription	Brain Anterior Caudate	brain
23	chr15:83233800-83234600	Enhancers	H9 Cell Line	embryonic stem cell
24	chr15:83233800-83234800	Weak transcription	Osteobl	bone
25	chr15:83233800-83236600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr15:83233800-83237200	Genic enhancers	Brain Dorsolateral Prefrontal Cortex	brain
27	chr15:83234000-83234400	Enhancers	iPS-18 Cell Line	embryonic stem cell
28	chr15:83234000-83234400	Enhancers	HSMMtube	muscle
29	chr15:83234000-83234600	Enhancers	H1 Cell Line	embryonic stem cell
30	chr15:83234000-83234600	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr15:83234000-83234600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr15:83234000-83234800	Enhancers	HUES48 Cell Line	embryonic stem cell
33	chr15:83234000-83234800	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr15:83234000-83234800	Enhancers	iPS-15b Cell Line	embryonic stem cell
35	chr15:83234000-83238600	Weak transcription	Brain Hippocampus Middle	brain
36	chr15:83234200-83234400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr15:83234200-83234400	Enhancers	Skeletal Muscle Male	skeletal muscle
38	chr15:83234200-83234800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr15:83234200-83235400	Weak transcription	Brain Cingulate Gyrus	brain
40	chr15:83234200-83238800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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