Variant report
| Variant | rs8037101 |
|---|---|
| Chromosome Location | chr15:54563907-54563908 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs11638986 | 0.82[CHB][hapmap] |
| rs12161946 | 1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes] |
| rs12906606 | 0.91[CHB][hapmap] |
| rs12908409 | 0.91[CHB][hapmap] |
| rs12911007 | 1.00[CHB][hapmap] |
| rs12911506 | 1.00[CHB][hapmap] |
| rs12916984 | 0.83[CHB][hapmap] |
| rs12917198 | 0.91[CHB][hapmap] |
| rs16974341 | 1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes] |
| rs16974346 | 1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes] |
| rs16974347 | 0.82[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes] |
| rs16974350 | 1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes] |
| rs16974352 | 1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes] |
| rs16974354 | 1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes] |
| rs16974357 | 0.82[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes] |
| rs2414287 | 1.00[CHB][hapmap] |
| rs2414289 | 0.83[CHB][hapmap] |
| rs28410351 | 0.80[EUR][1000 genomes] |
| rs28550623 | 0.80[EUR][1000 genomes] |
| rs28676923 | 0.80[EUR][1000 genomes] |
| rs2899536 | 0.91[CHB][hapmap] |
| rs4776220 | 0.83[CHB][hapmap] |
| rs73411912 | 0.80[EUR][1000 genomes] |
| rs73411926 | 0.80[EUR][1000 genomes] |
| rs73411939 | 0.95[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs73411949 | 0.93[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs8026128 | 0.83[CHB][hapmap] |
| rs8039248 | 0.83[CHB][hapmap] |
| rs8039848 | 0.90[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1052235 | chr15:53677524-54618723 | Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 2 | nsv542388 | chr15:53677524-54618723 | Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 3 | nsv817539 | chr15:54132584-55095235 | Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 4 | esv1845471 | chr15:54556063-54685463 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr15:54547000-54652600 | Weak transcription | Fetal Lung | lung |
