Variant report

Variant	rs8037519
Chromosome Location	chr15:92936624-92936625
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:92936271-92938347	H1-hESC	embryonic stem cell:	n/a	n/a
2	MAX	chr15:92936463-92938759	H1-hESC	embryonic stem cell:	n/a	chr15:92938512-92938521 chr15:92937667-92937677 chr15:92936907-92936917 chr15:92938011-92938021 chr15:92937571-92937581
3	SIN3A	chr15:92936277-92938776	H1-hESC	embryonic stem cell:	n/a	chr15:92936363-92936376 chr15:92936514-92936523 chr15:92938276-92938290 chr15:92938301-92938312 chr15:92937586-92937597 chr15:92936394-92936403
4	RAD21	chr15:92936492-92937068	H1-hESC	embryonic stem cell:	n/a	n/a
5	TAF1	chr15:92936425-92938207	H1-neurons	neurons:	n/a	n/a
6	ZNF143	chr15:92936441-92936990	H1-hESC	embryonic stem cell:	n/a	chr15:92936806-92936816
7	SIN3AK20	chr15:92936589-92937649	H1-hESC	embryonic stem cell:	n/a	n/a
8	CREB1	chr15:92936565-92937698	H1-hESC	embryonic stem cell:	n/a	n/a
9	CTBP2	chr15:92936285-92937466	H1-hESC	embryonic stem cell:	n/a	n/a
10	TAF1	chr15:92936612-92937317	H1-hESC	embryonic stem cell:	n/a	n/a
11	CHD2	chr15:92936414-92936773	H1-hESC	embryonic stem cell:	n/a	n/a
12	MXI1	chr15:92936549-92939002	SK-N-SH	brain:	n/a	n/a
13	MAX	chr15:92936603-92937440	H1-hESC	embryonic stem cell:	n/a	chr15:92936907-92936917
14	REST	chr15:92936299-92939165	H1-neurons	neurons:	n/a	chr15:92936368-92936382 chr15:92938299-92938312 chr15:92937734-92937747 chr15:92939053-92939073 chr15:92936459-92936472 chr15:92938397-92938410 chr15:92937215-92937228 chr15:92936459-92936472
15	POLR2A	chr15:92936281-92938278	H1-neurons	neurons:	n/a	n/a
16	POLR2A	chr15:92936218-92938920	H1-neurons	neurons:	n/a	n/a
17	GATA2	chr15:92936237-92936823	SH-SY5Y	brain:	n/a	n/a
18	ZNF263	chr15:92936574-92937484	HEK293-T-REx	kidney:	n/a	chr15:92936977-92936986 chr15:92937235-92937256
19	MAX	chr15:92936496-92938099	H1-hESC	embryonic stem cell:	n/a	chr15:92937667-92937677 chr15:92936907-92936917 chr15:92938011-92938021 chr15:92937571-92937581

Variant related genes	Relation type
ST8SIA2	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17702313	1.00[TSI][hapmap]
rs28623194	1.00[EUR][1000 genomes]
rs8029338	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1049561	chr15:92758434-93097965	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
4	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
5	esv3393959	chr15:92935948-92939196	Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92935400-92938400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
2	chr15:92935400-92938800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
3	chr15:92935600-92936800	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
4	chr15:92935800-92936800	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
5	chr15:92935800-92936800	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr15:92935800-92938800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
7	chr15:92936200-92936800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr15:92936200-92936800	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr15:92936200-92936800	Enhancers	Fetal Heart	heart
10	chr15:92936200-92938600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
11	chr15:92936200-92939400	Active TSS	HSMM	muscle
12	chr15:92936400-92936800	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr15:92936400-92936800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr15:92936400-92936800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr15:92936400-92936800	Flanking Active TSS	Fetal Brain Male	brain
16	chr15:92936400-92936800	Flanking Bivalent TSS/Enh	Fetal Lung	lung
17	chr15:92936400-92936800	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
18	chr15:92936400-92936800	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
19	chr15:92936400-92936800	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
20	chr15:92936400-92937000	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr15:92936400-92937000	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr15:92936400-92937000	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
23	chr15:92936400-92937000	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
24	chr15:92936400-92937000	Flanking Bivalent TSS/Enh	Fetal Thymus	thymus
25	chr15:92936400-92937000	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
26	chr15:92936400-92938200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
27	chr15:92936400-92938600	Active TSS	Breast Myoepithelial Primary Cells	Breast
28	chr15:92936400-92938800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr15:92936400-92938800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr15:92936400-92939200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
31	chr15:92936600-92936800	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr15:92936600-92936800	Flanking Bivalent TSS/Enh	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr15:92936600-92936800	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
34	chr15:92936600-92936800	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
35	chr15:92936600-92936800	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
36	chr15:92936600-92936800	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr15:92936600-92936800	Bivalent Enhancer	Primary mononuclear cells fromperipheralblood	Blood
38	chr15:92936600-92936800	Bivalent Enhancer	Adipose Nuclei	Adipose
39	chr15:92936600-92936800	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
40	chr15:92936600-92936800	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
41	chr15:92936600-92936800	Bivalent/Poised TSS	Fetal Kidney	kidney
42	chr15:92936600-92936800	Flanking Active TSS	Left Ventricle	heart
43	chr15:92936600-92936800	Bivalent Enhancer	Rectal Mucosa Donor 31	rectum
44	chr15:92936600-92936800	Flanking Bivalent TSS/Enh	A549	lung
45	chr15:92936600-92936800	Bivalent/Poised TSS	NH-A	brain
46	chr15:92936600-92937000	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr15:92936600-92937000	Bivalent/Poised TSS	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr15:92936600-92937000	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr15:92936600-92937000	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
50	chr15:92936600-92937000	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin

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