Variant report

Variant	rs8037652
Chromosome Location	chr15:59249551-59249552
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:59249330..59250119-chr15:59784856..59785723,2	K562	blood:
2	chr15:59244376..59246814-chr15:59247299..59251469,3	MCF-7	breast:
3	chr15:58520038..58520592-chr15:59249453..59250225,3	K562	blood:
4	chr15:59223706..59226061-chr15:59247333..59250101,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137776	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1014443	0.89[JPT][hapmap]
rs10518995	0.87[CHB][hapmap]
rs12898966	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12910349	0.81[CHB][hapmap]
rs12912335	0.81[CHB][hapmap]
rs17236327	0.85[JPT][hapmap]
rs17302066	0.84[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap]
rs35869999	0.80[ASN][1000 genomes]
rs953204	0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34110	chr15:58949991-59381634	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
3	esv1850946	chr15:59174539-59429160	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs8037652	FAM63B	cis	cerebellum	SCAN
rs8037652	ALKBH7	trans	parietal	SCAN

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59244600-59249600	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr15:59244800-59249600	Weak transcription	Gastric	stomach
3	chr15:59245400-59249800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr15:59245400-59249800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr15:59245400-59249800	Weak transcription	NHLF	lung
6	chr15:59245400-59249800	Weak transcription	Osteobl	bone
7	chr15:59245400-59255000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr15:59245600-59249600	Weak transcription	Adipose Nuclei	Adipose
9	chr15:59245600-59249800	Weak transcription	NHDF-Ad	bronchial
10	chr15:59245800-59255000	Weak transcription	HMEC	breast
11	chr15:59246000-59249600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr15:59249400-59249600	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
13	chr15:59249400-59249800	Enhancers	Fetal Heart	heart
14	chr15:59249400-59249800	Enhancers	Stomach Mucosa	stomach
15	chr15:59249400-59249800	Enhancers	Hela-S3	cervix
16	chr15:59249400-59249800	Enhancers	HepG2	liver
17	chr15:59249400-59250000	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr15:59249400-59250000	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr15:59249400-59250000	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr15:59249400-59250000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr15:59249400-59250000	Enhancers	Primary B cells from peripheral blood	blood
22	chr15:59249400-59250000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
23	chr15:59249400-59250000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr15:59249400-59250000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr15:59249400-59250000	Enhancers	Brain Angular Gyrus	brain
26	chr15:59249400-59250000	Enhancers	A549	lung
27	chr15:59249400-59250000	Enhancers	Dnd41	blood
28	chr15:59249400-59250000	Enhancers	K562	blood
29	chr15:59249400-59250200	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr15:59249400-59250200	Enhancers	GM12878-XiMat	blood

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