Variant report

Variant	rs8037939
Chromosome Location	chr15:53044635-53044636
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12437633	1.00[EUR][1000 genomes]
rs12437652	1.00[EUR][1000 genomes]
rs12438524	1.00[EUR][1000 genomes]
rs12439740	1.00[EUR][1000 genomes]
rs12440398	1.00[EUR][1000 genomes]
rs2075613	1.00[TSI][hapmap]
rs28457085	0.93[AFR][1000 genomes]
rs28658352	0.96[AFR][1000 genomes]
rs3858909	1.00[TSI][hapmap]
rs74014119	1.00[EUR][1000 genomes]
rs7496443	1.00[EUR][1000 genomes]
rs8038634	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471245	chr15:52607262-53187165	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv1041421	chr15:52661342-53148286	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv569426	chr15:53014003-53046210	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv457142	chr15:53041887-53091896	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
5	nsv569427	chr15:53041887-53091896	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:53040000-53045000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:53040000-53048200	Weak transcription	HepG2	liver
3	chr15:53041400-53045600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr15:53041800-53045000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr15:53042800-53045600	Enhancers	H1 Cell Line	embryonic stem cell
6	chr15:53043000-53046200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr15:53043200-53046000	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr15:53043200-53046000	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr15:53043400-53045200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr15:53043400-53045600	Weak transcription	Liver	Liver
11	chr15:53043400-53046000	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr15:53043400-53046000	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr15:53043400-53046200	Enhancers	H9 Cell Line	embryonic stem cell
14	chr15:53043600-53046200	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr15:53043600-53061000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr15:53043800-53044800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr15:53044000-53049200	Weak transcription	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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