Variant report

Variant	rs8038222
Chromosome Location	chr15:55096082-55096083
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs28405653	0.90[AFR][1000 genomes]
rs28444221	0.93[AFR][1000 genomes]
rs28576725	0.85[AFR][1000 genomes]
rs28671652	0.93[AFR][1000 genomes]
rs8028939	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833013	chr15:54927825-55135274	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1035785	chr15:54951691-55266222	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv542390	chr15:54951691-55266222	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1045264	chr15:54981538-55103777	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1039860	chr15:55010228-55198111	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1043176	chr15:55010228-55563000	Genic enhancers Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
7	nsv1042741	chr15:55068022-55622497	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
8	nsv525041	chr15:55068209-55136755	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:55094200-55096800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr15:55094200-55097200	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr15:55094800-55096600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr15:55095000-55097200	Enhancers	Primary hematopoietic stem cells	blood
5	chr15:55095200-55096200	Enhancers	Hela-S3	cervix
6	chr15:55095600-55096400	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr15:55095800-55096200	Enhancers	A549	lung
8	chr15:55095800-55096600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr15:55095800-55096600	Enhancers	GM12878-XiMat	blood
10	chr15:55096000-55096600	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr15:55096000-55100200	Weak transcription	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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