Variant report

Variant	rs8038515
Chromosome Location	chr15:92835647-92835648
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10162665	0.84[EUR][1000 genomes]
rs10520708	0.91[EUR][1000 genomes]
rs11074058	0.90[EUR][1000 genomes]
rs16946687	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17645820	0.93[EUR][1000 genomes]
rs28566962	0.92[EUR][1000 genomes]
rs4777930	0.92[EUR][1000 genomes]
rs4777934	0.91[EUR][1000 genomes]
rs62009315	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1049561	chr15:92758434-93097965	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92832600-92840400	Weak transcription	Gastric	stomach
2	chr15:92833800-92838000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr15:92834000-92837800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr15:92834000-92838000	Weak transcription	Stomach Mucosa	stomach
5	chr15:92835400-92836000	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr15:92835400-92836000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr15:92835600-92836000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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